Variant report

Variant	rs9352701
Chromosome Location	chr6:79859877-79859878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10806154	0.81[ASN][1000 genomes]
rs11758432	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs11964204	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1338023	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs2275290	0.81[ASN][1000 genomes]
rs2275291	0.81[ASN][1000 genomes]
rs3805746	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs3818839	0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs3929867	0.81[ASN][1000 genomes]
rs62411261	0.97[ASN][1000 genomes]
rs6940949	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7776138	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9294130	0.94[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9341760	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9343859	0.83[ASN][1000 genomes]
rs9343865	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs9343867	0.86[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9343869	1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs9343875	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9343876	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9350797	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs9350801	0.85[ASN][1000 genomes]
rs9352688	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs9352693	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs9352696	0.98[ASN][1000 genomes]
rs9359361	0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs9359366	0.97[ASN][1000 genomes]
rs9361478	0.83[ASN][1000 genomes]
rs9361481	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs9361483	0.82[ASN][1000 genomes]
rs9361497	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443642	0.89[ASN][1000 genomes]
rs9448600	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs9448601	0.81[ASN][1000 genomes]
rs9448616	0.94[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs9448647	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs956550	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79858600-79862400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr6:79859200-79861400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:79859200-79861600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:79859400-79861600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:79859400-79861800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:79859400-79864400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:79859600-79860000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:79859600-79860000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:79859600-79860000	Enhancers	Fetal Heart	heart
10	chr6:79859600-79860200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:79859600-79860200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:79859600-79861000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:79859600-79861000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:79859600-79861600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:79859600-79863800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:79859800-79860200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:79859800-79861800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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