Variant report

Variant	rs2327361
Chromosome Location	chr6:133906701-133906702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12664733	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12664780	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17062700	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1878551	0.92[EUR][1000 genomes]
rs2327350	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55786252	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62427500	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62427501	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62427512	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62427513	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62427514	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62427515	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62427516	0.83[EUR][1000 genomes]
rs6569885	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7765837	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7774642	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493673	0.84[ASN][1000 genomes]
rs9493674	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133895600-133908000	Weak transcription	NHDF-Ad	bronchial
2	chr6:133898600-133911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:133904800-133909800	Enhancers	Fetal Lung	lung
4	chr6:133905400-133908200	Weak transcription	NHLF	lung
5	chr6:133906000-133908800	Weak transcription	HSMM	muscle
6	chr6:133906000-133912000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:133906200-133906800	Enhancers	A549	lung
8	chr6:133906600-133907200	Enhancers	Fetal Kidney	kidney
9	chr6:133906600-133908200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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