Variant report

Variant	rs62427500
Chromosome Location	chr6:133899923-133899924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12664733	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17062700	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1878551	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2327350	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2327361	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35428547	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62427501	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62427512	0.82[EUR][1000 genomes]
rs6569885	0.92[EUR][1000 genomes]
rs6907242	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs6907424	0.91[ASN][1000 genomes]
rs7452066	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7774642	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9493669	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9493676	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv818457	chr6:133899539-133905744	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133895600-133908000	Weak transcription	NHDF-Ad	bronchial
2	chr6:133898600-133911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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