Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12664733	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17062700	0.80[EUR][1000 genomes]
rs1878551	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2636591	0.83[AFR][1000 genomes]
rs2636612	0.83[AFR][1000 genomes]
rs2636614	0.83[AFR][1000 genomes]
rs2636615	0.85[AFR][1000 genomes]
rs35428547	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55786252	0.95[EUR][1000 genomes]
rs62427500	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62427501	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62427512	0.91[EUR][1000 genomes]
rs62427513	0.93[EUR][1000 genomes]
rs62427514	0.93[EUR][1000 genomes]
rs62427515	0.93[EUR][1000 genomes]
rs62427516	0.93[EUR][1000 genomes]
rs6569885	0.80[EUR][1000 genomes]
rs6907242	0.90[ASN][1000 genomes]
rs6907424	0.90[ASN][1000 genomes]
rs6907934	0.87[EUR][1000 genomes]
rs7765837	0.94[EUR][1000 genomes]
rs9385657	0.87[AFR][1000 genomes]
rs9493666	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9493669	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493674	0.95[EUR][1000 genomes]
rs9493676	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7452066	SAMD3	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133932200-133944200	Weak transcription	NH-A	brain
2	chr6:133936200-133942400	Weak transcription	Fetal Stomach	stomach
3	chr6:133936200-133942600	Weak transcription	Ovary	ovary
4	chr6:133937000-133942800	Weak transcription	A549	lung

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