Variant report

Variant	rs35428547
Chromosome Location	chr6:133930476-133930477
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12664733	0.88[ASN][1000 genomes]
rs1878551	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55786252	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62427500	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62427501	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62427512	0.89[EUR][1000 genomes]
rs62427513	0.91[EUR][1000 genomes]
rs62427514	0.91[EUR][1000 genomes]
rs62427515	0.91[EUR][1000 genomes]
rs62427516	0.91[EUR][1000 genomes]
rs6907242	0.90[ASN][1000 genomes]
rs6907424	0.90[ASN][1000 genomes]
rs6907934	0.85[EUR][1000 genomes]
rs7452066	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765837	0.92[EUR][1000 genomes]
rs9493666	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9493669	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493674	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9493676	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133925200-133930800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:133927000-133932000	Weak transcription	Adipose Nuclei	Adipose
3	chr6:133929000-133931600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:133929000-133935600	Enhancers	Hela-S3	cervix
5	chr6:133929800-133931200	Enhancers	A549	lung
6	chr6:133930000-133933000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:133930200-133931200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:133930200-133932400	Enhancers	HSMM	muscle
9	chr6:133930400-133931400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:133930400-133931400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:133930400-133931600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:133930400-133931600	Enhancers	Fetal Lung	lung
13	chr6:133930400-133932400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:133930400-133932600	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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