Variant report

Variant	rs9493666
Chromosome Location	chr6:133927016-133927017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1878551	0.81[EUR][1000 genomes]
rs35428547	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55786252	0.91[EUR][1000 genomes]
rs62427512	0.87[EUR][1000 genomes]
rs62427513	0.89[EUR][1000 genomes]
rs62427514	0.89[EUR][1000 genomes]
rs62427515	0.89[EUR][1000 genomes]
rs62427516	0.89[EUR][1000 genomes]
rs6907934	0.85[EUR][1000 genomes]
rs7452066	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7765837	0.90[EUR][1000 genomes]
rs9493669	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9493674	0.91[EUR][1000 genomes]
rs9493676	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133925200-133930800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:133925400-133928000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:133925400-133928400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:133926600-133930000	Enhancers	Fetal Lung	lung
5	chr6:133927000-133932000	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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