The 2.0 version of rSNPBase

Variant report

Variant rs2328459
Chromosome Location chr6:143497006-143497007
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143443800-143498800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr6:143444600-143516400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr6:143453000-143497200 Weak transcription Pancreas Pancrea
4 chr6:143453000-143508600 Weak transcription Fetal Lung lung
5 chr6:143453000-143510600 Weak transcription Brain Inferior Temporal Lobe brain
6 chr6:143458800-143529200 Weak transcription Primary T cells from cord blood blood
7 chr6:143459600-143505400 Weak transcription HUES48 Cell Line embryonic stem cell
8 chr6:143462200-143497800 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr6:143463000-143508400 Weak transcription Stomach Smooth Muscle stomach
10 chr6:143477000-143501200 Weak transcription Right Atrium heart
11 chr6:143479600-143497200 Weak transcription Esophagus oesophagus
12 chr6:143479600-143499400 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr6:143479600-143508600 Weak transcription Colon Smooth Muscle Colon
14 chr6:143479600-143534600 Weak transcription Gastric stomach
15 chr6:143480200-143501200 Weak transcription Brain Angular Gyrus brain
16 chr6:143480400-143497200 Weak transcription Lung lung
17 chr6:143481800-143497600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr6:143482200-143497200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
19 chr6:143482400-143511200 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr6:143484200-143500000 Weak transcription Fetal Heart heart
21 chr6:143484400-143519800 Weak transcription Primary neutrophils fromperipheralblood blood
22 chr6:143485200-143509400 Weak transcription H1 Cell Line embryonic stem cell
23 chr6:143486000-143501400 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr6:143486000-143510400 Weak transcription Brain Anterior Caudate brain
25 chr6:143487000-143516600 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr6:143487200-143506400 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr6:143487600-143497200 Weak transcription Osteobl bone
28 chr6:143487600-143508600 Weak transcription Ovary ovary
29 chr6:143487600-143518000 Weak transcription Fetal Kidney kidney
30 chr6:143487800-143498800 Weak transcription Left Ventricle heart
31 chr6:143488400-143510400 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr6:143488600-143506400 Weak transcription Rectal Mucosa Donor 29 rectum
33 chr6:143489000-143497600 Weak transcription HSMM muscle
34 chr6:143491200-143497200 Weak transcription HepG2 liver
35 chr6:143492600-143497600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr6:143492800-143497200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
37 chr6:143495200-143497600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr6:143495600-143497200 ZNF genes & repeats Duodenum Mucosa Duodenum
39 chr6:143495600-143498200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr6:143495800-143500600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr6:143495800-143509800 Weak transcription Primary B cells from cord blood blood
42 chr6:143496000-143501200 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr6:143496000-143509400 Weak transcription Right Ventricle heart
44 chr6:143496400-143497200 ZNF genes & repeats GM12878-XiMat blood
45 chr6:143496400-143498200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
46 chr6:143496400-143500600 Strong transcription Fetal Intestine Large intestine
47 chr6:143496600-143497200 Weak transcription Liver Liver
48 chr6:143496600-143505600 Weak transcription Brain Hippocampus Middle brain
49 chr6:143496600-143508400 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr6:143496800-143497400 ZNF genes & repeats Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015