Variant report

Variant	rs11155281
Chromosome Location	chr6:143485023-143485024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr6:143484713-143486256	K562	blood:	n/a	chr6:143485367-143485380 chr6:143484977-143484986
2	RCOR1	chr6:143484690-143485233	K562	blood:	n/a	n/a
3	IRF1	chr6:143484757-143487090	K562	blood:	n/a	chr6:143487022-143487042 chr6:143487036-143487050 chr6:143485367-143485380 chr6:143484977-143484986 chr6:143487036-143487046 chr6:143487032-143487046 chr6:143486945-143486959
4	TAL1	chr6:143484767-143486300	K562	blood:	n/a	n/a
5	ARID3A	chr6:143484678-143486728	K562	blood:	n/a	n/a
6	EP300	chr6:143484751-143486232	K562	blood:	n/a	n/a
7	TBP	chr6:143484882-143485076	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:143392521..143394275-chr6:143483305..143485747,2	K562	blood:
2	chr6:143379898..143383638-chr6:143483833..143489108,8	K562	blood:
3	chr6:143381113..143383323-chr6:143484337..143488491,4	K562	blood:
4	chr6:143443205..143445427-chr6:143484533..143486072,2	K562	blood:

Variant related genes	Relation type
AIG1	TF binding region
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12197685	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12210837	1.00[CHD][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs17445480	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs200153	0.88[GIH][hapmap];0.82[MEX][hapmap]
rs2328456	0.89[CEU][hapmap]
rs2328457	0.89[CEU][hapmap]
rs2328459	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876549	0.89[CEU][hapmap]
rs2876550	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895601	0.89[CEU][hapmap]
rs4896621	0.85[CEU][hapmap]
rs56057685	1.00[ASN][1000 genomes]
rs6570550	0.81[CEU][hapmap]
rs6902998	0.85[CEU][hapmap]
rs7772833	0.83[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9403452	0.85[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11155281	NMBR	cis	parietal	SCAN

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143443800-143498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:143448400-143487400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:143452000-143497000	Weak transcription	Fetal Stomach	stomach
5	chr6:143453000-143497200	Weak transcription	Pancreas	Pancrea
6	chr6:143453000-143508600	Weak transcription	Fetal Lung	lung
7	chr6:143453000-143510600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:143458200-143486600	Weak transcription	Aorta	Aorta
9	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
10	chr6:143459600-143486600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:143459600-143505400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:143461000-143487400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:143462200-143497800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:143463000-143508400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr6:143470200-143485800	Weak transcription	HepG2	liver
16	chr6:143471800-143486600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:143477000-143501200	Weak transcription	Right Atrium	heart
18	chr6:143479200-143488400	Weak transcription	HSMM	muscle
19	chr6:143479600-143496000	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:143479600-143497200	Weak transcription	Esophagus	oesophagus
21	chr6:143479600-143499400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:143479600-143508600	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:143479600-143534600	Weak transcription	Gastric	stomach
24	chr6:143480000-143486600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:143480200-143501200	Weak transcription	Brain Angular Gyrus	brain
26	chr6:143480400-143485400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:143480400-143486000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:143480400-143497200	Weak transcription	Lung	lung
29	chr6:143480600-143490400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:143481600-143488400	Weak transcription	NHEK	skin
31	chr6:143481800-143487200	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:143481800-143487600	Weak transcription	HMEC	breast
33	chr6:143481800-143497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:143481800-143497600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:143482200-143485800	Weak transcription	Osteobl	bone
36	chr6:143482200-143488800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:143482200-143497200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:143482400-143511200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr6:143482600-143488600	Weak transcription	NHDF-Ad	bronchial
40	chr6:143483200-143487000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:143483200-143488400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:143483800-143485200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:143484000-143485600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr6:143484200-143485600	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr6:143484200-143485800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:143484200-143487600	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:143484200-143489000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr6:143484200-143500000	Weak transcription	Fetal Heart	heart
49	chr6:143484400-143485800	Weak transcription	Liver	Liver
50	chr6:143484400-143486200	Weak transcription	Fetal Intestine Large	intestine

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