Variant report

Variant	rs9403452
Chromosome Location	chr6:143481592-143481593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143478311..143479872-chr6:143480244..143482258,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11155281	0.85[CEU][hapmap]
rs13190850	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1573992	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2328456	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs2328457	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs2876549	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs2876550	0.85[CEU][hapmap]
rs4895601	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs4896621	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs6570550	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs6902998	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9386025	0.84[EUR][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143443800-143498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:143448400-143487400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:143452000-143497000	Weak transcription	Fetal Stomach	stomach
5	chr6:143453000-143481600	Weak transcription	Right Ventricle	heart
6	chr6:143453000-143497200	Weak transcription	Pancreas	Pancrea
7	chr6:143453000-143508600	Weak transcription	Fetal Lung	lung
8	chr6:143453000-143510600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:143458200-143486600	Weak transcription	Aorta	Aorta
10	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:143459200-143484200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:143459600-143484000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:143459600-143486600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:143459600-143505400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:143461000-143487400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:143462200-143497800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:143463000-143508400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:143465800-143483600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:143468400-143484600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:143469800-143483600	Weak transcription	Fetal Intestine Large	intestine
21	chr6:143470200-143485800	Weak transcription	HepG2	liver
22	chr6:143471800-143486600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:143476400-143482000	Enhancers	Psoas Muscle	Psoas
24	chr6:143477000-143482200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr6:143477000-143501200	Weak transcription	Right Atrium	heart
26	chr6:143477800-143481600	Enhancers	NHEK	skin
27	chr6:143477800-143481800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:143477800-143481800	Enhancers	HMEC	breast
29	chr6:143477800-143482200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:143478200-143483800	Weak transcription	Fetal Intestine Small	intestine
31	chr6:143478400-143482200	Enhancers	Osteobl	bone
32	chr6:143478800-143482600	Enhancers	NHDF-Ad	bronchial
33	chr6:143479200-143482200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:143479200-143488400	Weak transcription	HSMM	muscle
35	chr6:143479400-143482200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:143479600-143485000	Weak transcription	Ovary	ovary
37	chr6:143479600-143496000	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:143479600-143497200	Weak transcription	Esophagus	oesophagus
39	chr6:143479600-143499400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:143479600-143508600	Weak transcription	Colon Smooth Muscle	Colon
41	chr6:143479600-143534600	Weak transcription	Gastric	stomach
42	chr6:143479800-143481800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:143479800-143482200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:143480000-143481600	Weak transcription	K562	blood
45	chr6:143480000-143486600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:143480200-143483000	Weak transcription	Liver	Liver
47	chr6:143480200-143501200	Weak transcription	Brain Angular Gyrus	brain
48	chr6:143480400-143481600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:143480400-143485400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:143480400-143486000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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