Variant report

Variant	rs2328457
Chromosome Location	chr6:143483710-143483711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143392521..143394275-chr6:143483305..143485747,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11155281	0.89[CEU][hapmap]
rs13190850	0.92[EUR][1000 genomes]
rs17629067	0.95[CHB][hapmap]
rs1836521	0.89[ASN][1000 genomes]
rs2328456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876549	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[EUR][1000 genomes]
rs2876550	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs4895601	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896621	0.96[CEU][hapmap];0.90[CHB][hapmap];0.80[GIH][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs6570550	0.92[CEU][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs6902998	0.96[CEU][hapmap];0.90[CHB][hapmap];0.80[GIH][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs6908441	0.91[LWK][hapmap];0.93[MKK][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs9386025	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390068	0.93[YRI][hapmap]
rs9403452	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs9403455	0.95[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9403458	0.84[LWK][hapmap];0.90[MKK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2328457	RAB32	cis	parietal	SCAN

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143443800-143498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:143448400-143487400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:143452000-143497000	Weak transcription	Fetal Stomach	stomach
5	chr6:143453000-143497200	Weak transcription	Pancreas	Pancrea
6	chr6:143453000-143508600	Weak transcription	Fetal Lung	lung
7	chr6:143453000-143510600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:143458200-143486600	Weak transcription	Aorta	Aorta
9	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
10	chr6:143459200-143484200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:143459600-143484000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:143459600-143486600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:143459600-143505400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:143461000-143487400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:143462200-143497800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:143463000-143508400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:143468400-143484600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:143470200-143485800	Weak transcription	HepG2	liver
19	chr6:143471800-143486600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:143477000-143501200	Weak transcription	Right Atrium	heart
21	chr6:143478200-143483800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:143479200-143488400	Weak transcription	HSMM	muscle
23	chr6:143479600-143485000	Weak transcription	Ovary	ovary
24	chr6:143479600-143496000	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:143479600-143497200	Weak transcription	Esophagus	oesophagus
26	chr6:143479600-143499400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:143479600-143508600	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:143479600-143534600	Weak transcription	Gastric	stomach
29	chr6:143480000-143486600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:143480200-143501200	Weak transcription	Brain Angular Gyrus	brain
31	chr6:143480400-143485400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:143480400-143486000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:143480400-143497200	Weak transcription	Lung	lung
34	chr6:143480600-143490400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:143481000-143483800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:143481600-143488400	Weak transcription	NHEK	skin
37	chr6:143481800-143483800	Weak transcription	Left Ventricle	heart
38	chr6:143481800-143487200	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:143481800-143487600	Weak transcription	HMEC	breast
40	chr6:143481800-143497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:143481800-143497600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:143482000-143483800	Weak transcription	Psoas Muscle	Psoas
43	chr6:143482200-143483800	Weak transcription	K562	blood
44	chr6:143482200-143485800	Weak transcription	Osteobl	bone
45	chr6:143482200-143488800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:143482200-143497200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:143482400-143511200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr6:143482600-143488600	Weak transcription	NHDF-Ad	bronchial
49	chr6:143483000-143484400	Strong transcription	Liver	Liver
50	chr6:143483200-143487000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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