Variant report

Variant	rs9403455
Chromosome Location	chr6:143487166-143487167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143446661..143449248-chr6:143486754..143488427,2	K562	blood:
2	chr6:143379898..143383638-chr6:143483833..143489108,8	K562	blood:
3	chr6:143381113..143383323-chr6:143484337..143488491,4	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13215649	0.87[ASN][1000 genomes]
rs1573992	0.91[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs2154404	0.92[CHB][hapmap]
rs2328454	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2328455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328456	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2328457	0.95[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs3761997	0.92[CHB][hapmap]
rs4896622	0.92[CHB][hapmap]
rs55956634	0.87[ASN][1000 genomes]
rs6908441	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754866	0.96[CEU][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9390068	0.92[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9403456	0.87[ASN][1000 genomes]
rs9403458	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9403455	C6orf94	cis	cerebellum	SCAN

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143443800-143498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:143448400-143487400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:143452000-143497000	Weak transcription	Fetal Stomach	stomach
5	chr6:143453000-143497200	Weak transcription	Pancreas	Pancrea
6	chr6:143453000-143508600	Weak transcription	Fetal Lung	lung
7	chr6:143453000-143510600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
9	chr6:143459600-143505400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:143461000-143487400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:143462200-143497800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:143463000-143508400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:143477000-143501200	Weak transcription	Right Atrium	heart
14	chr6:143479200-143488400	Weak transcription	HSMM	muscle
15	chr6:143479600-143496000	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:143479600-143497200	Weak transcription	Esophagus	oesophagus
17	chr6:143479600-143499400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:143479600-143508600	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:143479600-143534600	Weak transcription	Gastric	stomach
20	chr6:143480200-143501200	Weak transcription	Brain Angular Gyrus	brain
21	chr6:143480400-143497200	Weak transcription	Lung	lung
22	chr6:143480600-143490400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:143481600-143488400	Weak transcription	NHEK	skin
24	chr6:143481800-143487200	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:143481800-143487600	Weak transcription	HMEC	breast
26	chr6:143481800-143497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:143481800-143497600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:143482200-143488800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:143482200-143497200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:143482400-143511200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:143482600-143488600	Weak transcription	NHDF-Ad	bronchial
32	chr6:143483200-143488400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:143484200-143487600	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:143484200-143489000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:143484200-143500000	Weak transcription	Fetal Heart	heart
36	chr6:143484400-143494200	Weak transcription	Fetal Intestine Small	intestine
37	chr6:143484400-143519800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:143484600-143487200	Enhancers	Primary hematopoietic stem cells	blood
39	chr6:143484800-143488400	Weak transcription	Placenta	Placenta
40	chr6:143485000-143487400	Weak transcription	Adipose Nuclei	Adipose
41	chr6:143485200-143497000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:143485200-143509400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:143485400-143487600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:143485800-143490800	Strong transcription	Liver	Liver
45	chr6:143485800-143491200	Strong transcription	HepG2	liver
46	chr6:143486000-143488400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:143486000-143492000	Weak transcription	Psoas Muscle	Psoas
48	chr6:143486000-143501400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr6:143486000-143510400	Weak transcription	Brain Anterior Caudate	brain
50	chr6:143486200-143487600	Strong transcription	Fetal Intestine Large	intestine

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