Variant report

Variant	rs7754866
Chromosome Location	chr6:143528263-143528264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143527632..143529423-chr6:143534389..143536274,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1573992	0.87[CEU][hapmap]
rs2328454	0.90[ASN][1000 genomes]
rs2328455	0.95[CEU][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs6908441	0.96[CEU][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9390068	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403455	0.96[CEU][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9403458	0.96[CEU][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.80[TSI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:143479600-143534600	Weak transcription	Gastric	stomach
3	chr6:143499200-143534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:143501400-143534800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:143505600-143534600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:143514400-143545200	Weak transcription	HMEC	breast
8	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:143520200-143533600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:143524400-143535200	Weak transcription	Right Atrium	heart
11	chr6:143524600-143531200	Strong transcription	K562	blood
12	chr6:143525600-143533600	Weak transcription	Aorta	Aorta
13	chr6:143525600-143534800	Weak transcription	Left Ventricle	heart
14	chr6:143525600-143544200	Weak transcription	HepG2	liver
15	chr6:143525800-143530400	Weak transcription	Fetal Intestine Small	intestine
16	chr6:143525800-143534000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:143525800-143534600	Weak transcription	Fetal Intestine Large	intestine
18	chr6:143525800-143545800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:143526000-143528400	Enhancers	Fetal Heart	heart
20	chr6:143526400-143528400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:143526400-143529000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:143526400-143530000	Weak transcription	Liver	Liver
23	chr6:143527200-143534600	Weak transcription	Fetal Lung	lung
24	chr6:143527400-143534600	Weak transcription	Fetal Kidney	kidney
25	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
26	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:143527800-143534600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:143528200-143528400	Enhancers	Rectal Smooth Muscle	rectum
29	chr6:143528200-143528800	Enhancers	Psoas Muscle	Psoas

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