Variant report

Variant	rs9390068
Chromosome Location	chr6:143522553-143522554
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143515436..143519922-chr6:143520164..143527026,9	K562	blood:
2	chr6:143522271..143525244-chr6:143525737..143528206,4	K562	blood:
3	chr6:143520892..143523163-chr6:143544136..143548035,3	K562	blood:
4	chr6:143380332..143383139-chr6:143520232..143522929,2	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2154404	0.85[CHB][hapmap]
rs2328454	0.90[ASN][1000 genomes]
rs2328455	0.93[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs2328456	0.90[YRI][hapmap]
rs2328457	0.93[YRI][hapmap]
rs3761997	0.83[CHB][hapmap]
rs4896622	0.83[CHB][hapmap]
rs6908441	0.92[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7754866	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403455	0.92[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9403458	0.92[CHB][hapmap];0.93[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:143479600-143534600	Weak transcription	Gastric	stomach
3	chr6:143497800-143522800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:143498000-143526000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:143499200-143525400	Weak transcription	Esophagus	oesophagus
6	chr6:143499200-143534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:143501400-143534800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:143505600-143534600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:143509600-143523200	Weak transcription	Adipose Nuclei	Adipose
10	chr6:143509600-143524400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:143509800-143523800	Weak transcription	Aorta	Aorta
12	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:143514400-143545200	Weak transcription	HMEC	breast
14	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:143516400-143525600	Weak transcription	Liver	Liver
16	chr6:143516800-143525400	Weak transcription	Fetal Intestine Small	intestine
17	chr6:143517200-143523800	Weak transcription	Ovary	ovary
18	chr6:143517200-143523800	Weak transcription	Right Atrium	heart
19	chr6:143517200-143528200	Weak transcription	Psoas Muscle	Psoas
20	chr6:143517400-143525800	Weak transcription	Fetal Stomach	stomach
21	chr6:143517800-143525200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:143518000-143524800	Weak transcription	HepG2	liver
23	chr6:143518200-143525200	Weak transcription	Fetal Intestine Large	intestine
24	chr6:143518400-143525000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:143519000-143525200	Weak transcription	HSMM	muscle
26	chr6:143520000-143523600	Weak transcription	Left Ventricle	heart
27	chr6:143520000-143525400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr6:143520000-143527200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:143520200-143533600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr6:143521000-143526400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:143522000-143524600	Genic enhancers	K562	blood

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