Variant report

Variant	rs6902998
Chromosome Location	chr6:143480074-143480075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143472942..143476937-chr6:143478509..143481079,5	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11155281	0.85[CEU][hapmap]
rs12665506	0.88[JPT][hapmap]
rs13190850	0.83[EUR][1000 genomes]
rs17629067	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2328454	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2328456	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[EUR][1000 genomes]
rs2328457	0.96[CEU][hapmap];0.90[CHB][hapmap];0.80[GIH][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs2328458	0.91[ASN][1000 genomes]
rs2876549	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2876550	0.89[CEU][hapmap]
rs4895601	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570550	0.94[ASW][hapmap];0.96[CEU][hapmap];0.87[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72990419	0.91[ASN][1000 genomes]
rs9386025	0.81[EUR][1000 genomes]
rs9403452	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs989325	0.82[JPT][hapmap]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143443800-143498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:143448400-143487400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:143452000-143497000	Weak transcription	Fetal Stomach	stomach
5	chr6:143453000-143481600	Weak transcription	Right Ventricle	heart
6	chr6:143453000-143497200	Weak transcription	Pancreas	Pancrea
7	chr6:143453000-143508600	Weak transcription	Fetal Lung	lung
8	chr6:143453000-143510600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:143458200-143486600	Weak transcription	Aorta	Aorta
10	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:143459200-143484200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:143459600-143484000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:143459600-143486600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:143459600-143505400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr6:143461000-143487400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:143462200-143497800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:143463000-143508400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr6:143465800-143483600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:143468400-143484600	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:143469800-143483600	Weak transcription	Fetal Intestine Large	intestine
21	chr6:143470200-143485800	Weak transcription	HepG2	liver
22	chr6:143471800-143486600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:143476400-143482000	Enhancers	Psoas Muscle	Psoas
24	chr6:143477000-143482200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr6:143477000-143501200	Weak transcription	Right Atrium	heart
26	chr6:143477800-143480200	Enhancers	Liver	Liver
27	chr6:143477800-143481600	Enhancers	NHEK	skin
28	chr6:143477800-143481800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:143477800-143481800	Enhancers	HMEC	breast
30	chr6:143477800-143482200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:143478000-143480400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr6:143478200-143483800	Weak transcription	Fetal Intestine Small	intestine
33	chr6:143478400-143482200	Enhancers	Osteobl	bone
34	chr6:143478600-143480800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:143478800-143480800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:143478800-143482600	Enhancers	NHDF-Ad	bronchial
37	chr6:143479000-143480600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:143479000-143480600	Enhancers	NHLF	lung
39	chr6:143479200-143480400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:143479200-143480400	Enhancers	Stomach Mucosa	stomach
41	chr6:143479200-143481000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:143479200-143481000	Enhancers	Left Ventricle	heart
43	chr6:143479200-143482200	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr6:143479200-143488400	Weak transcription	HSMM	muscle
45	chr6:143479400-143480200	Enhancers	Brain Angular Gyrus	brain
46	chr6:143479400-143481200	Enhancers	Fetal Muscle Leg	muscle
47	chr6:143479400-143482200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:143479600-143480200	Weak transcription	Adipose Nuclei	Adipose
49	chr6:143479600-143485000	Weak transcription	Ovary	ovary
50	chr6:143479600-143496000	Weak transcription	Brain Hippocampus Middle	brain

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