Variant report

Variant	rs2328508
Chromosome Location	chr6:144188805-144188806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144181106..144183993-chr6:144186106..144189190,3	K562	blood:
2	chr6:144181106..144183993-chr6:144186106..144190381,4	K562	blood:
3	chr6:144183593..144185426-chr6:144187366..144189875,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10872563	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11155328	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1810524	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1884089	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2277078	0.82[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2328509	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3818089	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4140442	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4379307	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4896676	0.91[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896678	0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896680	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427458	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918125	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6941262	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773870	0.80[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs9484817	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9496785	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv604806	chr6:144188805-144199416	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144172400-144189000	Weak transcription	Small Intestine	intestine
2	chr6:144178800-144203800	Weak transcription	Stomach Mucosa	stomach
3	chr6:144179800-144191200	Weak transcription	Psoas Muscle	Psoas
4	chr6:144183000-144193000	Weak transcription	Spleen	Spleen
5	chr6:144183200-144189000	Weak transcription	Gastric	stomach
6	chr6:144183200-144189800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:144183200-144190400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:144183400-144189000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:144184600-144189000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:144184600-144190600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:144185600-144193000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:144185800-144190600	Weak transcription	Fetal Kidney	kidney
13	chr6:144186000-144189800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:144186000-144192400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:144186000-144192800	Weak transcription	HSMMtube	muscle
16	chr6:144186000-144223000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:144186200-144193200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:144186600-144189400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:144186600-144193000	Weak transcription	Osteobl	bone
20	chr6:144186600-144193200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:144186800-144189000	Weak transcription	NHLF	lung
22	chr6:144186800-144189200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:144186800-144189400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:144186800-144190600	Weak transcription	Brain Germinal Matrix	brain
25	chr6:144186800-144193000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:144187000-144189200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:144187000-144189200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:144187000-144189200	Weak transcription	HSMM	muscle
29	chr6:144187000-144189200	Weak transcription	NH-A	brain
30	chr6:144187000-144192000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:144187000-144193200	Weak transcription	NHEK	skin
32	chr6:144187000-144193800	Weak transcription	Duodenum Mucosa	Duodenum
33	chr6:144187200-144191600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:144187400-144189000	Weak transcription	HMEC	breast
35	chr6:144187400-144189200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:144187400-144189200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:144187400-144189200	Weak transcription	Liver	Liver
38	chr6:144187400-144189200	Weak transcription	Fetal Intestine Large	intestine
39	chr6:144187600-144189200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:144187600-144189200	Weak transcription	Adipose Nuclei	Adipose
41	chr6:144187600-144189200	Weak transcription	Fetal Stomach	stomach
42	chr6:144187600-144189200	Weak transcription	Ovary	ovary
43	chr6:144187600-144189200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr6:144187600-144189200	Weak transcription	Thymus	Thymus
45	chr6:144187600-144189400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:144187600-144189400	Weak transcription	Aorta	Aorta
47	chr6:144187600-144189400	Weak transcription	Fetal Brain Female	brain
48	chr6:144187600-144190200	Weak transcription	Fetal Thymus	thymus
49	chr6:144187600-144191800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:144187600-144192000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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