Variant report

Variant	rs9484817
Chromosome Location	chr6:144175844-144175845
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144167768..144169620-chr6:144175617..144177952,2	K562	blood:
2	chr6:144162737..144166210-chr6:144175633..144179990,5	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf94-2	chr6:144175206-144177090	NONHSAT115364

Variant related genes	Relation type
ENSG00000135521	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10872563	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155328	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1810524	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1884089	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2277078	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2328508	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2328509	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3818089	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4140442	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4379307	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896676	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4896678	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4896680	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62427458	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6918125	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6941262	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7773870	0.94[ASN][1000 genomes]
rs9496785	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144165400-144178400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:144165600-144178400	Weak transcription	Stomach Mucosa	stomach
3	chr6:144165600-144186800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:144166000-144176400	Strong transcription	Fetal Muscle Trunk	muscle
5	chr6:144166000-144180200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:144166000-144186000	Strong transcription	Primary B cells from peripheral blood	blood
7	chr6:144166000-144187000	Strong transcription	Duodenum Mucosa	Duodenum
8	chr6:144166000-144188600	Strong transcription	Primary T cells from cord blood	blood
9	chr6:144170000-144177000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:144170000-144178000	Weak transcription	Colonic Mucosa	Colon
11	chr6:144170000-144178200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:144170000-144178400	Weak transcription	Fetal Brain Male	brain
13	chr6:144170200-144177400	Weak transcription	Aorta	Aorta
14	chr6:144170200-144177800	Weak transcription	Pancreas	Pancrea
15	chr6:144170400-144176400	Weak transcription	Fetal Kidney	kidney
16	chr6:144170600-144177800	Weak transcription	Right Ventricle	heart
17	chr6:144171200-144177400	Weak transcription	Esophagus	oesophagus
18	chr6:144171200-144182000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:144171400-144176400	Weak transcription	Brain Angular Gyrus	brain
20	chr6:144171400-144177400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:144172400-144176400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:144172400-144176800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:144172400-144177400	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:144172400-144177400	Weak transcription	Gastric	stomach
25	chr6:144172400-144177400	Weak transcription	Spleen	Spleen
26	chr6:144172400-144177800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:144172400-144177800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:144172400-144177800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:144172400-144177800	Weak transcription	Right Atrium	heart
30	chr6:144172400-144177800	Weak transcription	NHLF	lung
31	chr6:144172400-144178000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:144172400-144178000	Weak transcription	HMEC	breast
33	chr6:144172400-144178400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:144172400-144178400	Weak transcription	Hela-S3	cervix
35	chr6:144172400-144189000	Weak transcription	Small Intestine	intestine
36	chr6:144172600-144176200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:144172600-144176400	Weak transcription	Ovary	ovary
38	chr6:144172600-144176600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:144172600-144176600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:144172600-144176600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:144172600-144177200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:144172600-144177400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:144172600-144177400	Weak transcription	Fetal Stomach	stomach
44	chr6:144172600-144177600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:144172600-144177600	Weak transcription	Psoas Muscle	Psoas
46	chr6:144172600-144177600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:144172600-144177800	Weak transcription	HSMMtube	muscle
48	chr6:144172600-144177800	Weak transcription	K562	blood
49	chr6:144172600-144177800	Weak transcription	NHDF-Ad	bronchial
50	chr6:144172600-144178000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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