Variant report

Variant	rs9496785
Chromosome Location	chr6:144189718-144189719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144181106..144183993-chr6:144186106..144190381,4	K562	blood:
2	chr6:144183593..144185426-chr6:144187366..144189875,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10872563	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11155328	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1810524	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1884089	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2277078	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2328508	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328509	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3818089	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4140442	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4379307	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4896676	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896678	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896680	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427458	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918125	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6941262	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773870	0.96[ASN][1000 genomes]
rs9484817	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3408554	chr6:144106707-144369589	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv3522138	chr6:144174685-144367463	Enhancers Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3522139	chr6:144174685-144367463	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv830830	chr6:144177942-144380870	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv604806	chr6:144188805-144199416	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144178800-144203800	Weak transcription	Stomach Mucosa	stomach
2	chr6:144179800-144191200	Weak transcription	Psoas Muscle	Psoas
3	chr6:144183000-144193000	Weak transcription	Spleen	Spleen
4	chr6:144183200-144189800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:144183200-144190400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:144184600-144190600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:144185600-144193000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:144185800-144190600	Weak transcription	Fetal Kidney	kidney
9	chr6:144186000-144189800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:144186000-144192400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:144186000-144192800	Weak transcription	HSMMtube	muscle
12	chr6:144186000-144223000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:144186200-144193200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:144186600-144193000	Weak transcription	Osteobl	bone
15	chr6:144186600-144193200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:144186800-144190600	Weak transcription	Brain Germinal Matrix	brain
17	chr6:144186800-144193000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:144187000-144192000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:144187000-144193200	Weak transcription	NHEK	skin
20	chr6:144187000-144193800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:144187200-144191600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:144187600-144190200	Weak transcription	Fetal Thymus	thymus
23	chr6:144187600-144191800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:144187600-144192000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:144187600-144192200	Weak transcription	Lung	lung
26	chr6:144187600-144193000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:144187600-144193000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:144187600-144193200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:144187600-144193400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr6:144187600-144193400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:144187600-144199400	Weak transcription	Left Ventricle	heart
32	chr6:144187800-144190400	Weak transcription	Fetal Heart	heart
33	chr6:144187800-144192200	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:144187800-144192200	Weak transcription	Fetal Lung	lung
35	chr6:144187800-144193400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:144188200-144190000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:144188200-144190400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr6:144188400-144191000	ZNF genes & repeats	Fetal Muscle Leg	muscle
39	chr6:144188600-144191400	Weak transcription	Primary T cells from cord blood	blood
40	chr6:144188800-144192400	Weak transcription	Primary B cells from cord blood	blood
41	chr6:144189400-144189800	ZNF genes & repeats	Fetal Brain Female	brain
42	chr6:144189600-144190800	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links