Variant report

Variant	rs232909
Chromosome Location	chr1:59101841-59101842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59085711..59087328-chr1:59101267..59102915,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11207300	0.81[EUR][1000 genomes]
rs15307	0.90[EUR][1000 genomes]
rs170828	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs232778	0.86[EUR][1000 genomes]
rs232779	0.86[EUR][1000 genomes]
rs232783	0.86[EUR][1000 genomes]
rs232788	0.86[EUR][1000 genomes]
rs232790	0.87[EUR][1000 genomes]
rs232857	0.90[EUR][1000 genomes]
rs232862	0.88[EUR][1000 genomes]
rs232863	0.90[EUR][1000 genomes]
rs232867	0.88[EUR][1000 genomes]
rs232877	0.88[EUR][1000 genomes]
rs232878	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs232879	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs232880	0.88[EUR][1000 genomes]
rs232886	0.88[EUR][1000 genomes]
rs232901	0.88[EUR][1000 genomes]
rs232902	0.88[EUR][1000 genomes]
rs232904	0.88[EUR][1000 genomes]
rs232905	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs232906	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs232907	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs232908	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs232910	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs232911	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2746077	0.83[EUR][1000 genomes]
rs2746083	0.83[EUR][1000 genomes]
rs4912369	0.87[EUR][1000 genomes]
rs4912372	0.86[EUR][1000 genomes]
rs513436	0.87[EUR][1000 genomes]
rs542750	0.86[EUR][1000 genomes]
rs6661922	0.83[EUR][1000 genomes]
rs675871	0.87[EUR][1000 genomes]
rs688225	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003930	chr1:58930444-59157038	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59086400-59104000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:59093200-59115400	Weak transcription	NHEK	skin
3	chr1:59096000-59121600	Weak transcription	HUVEC	blood vessel
4	chr1:59096600-59121600	Weak transcription	Gastric	stomach
5	chr1:59101600-59102000	ZNF genes & repeats	Aorta	Aorta
6	chr1:59101600-59103600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:59101600-59109400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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