The 2.0 version of rSNPBase

Variant report

Variant rs232877
Chromosome Location chr1:59115293-59115294
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:64 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59093200-59115400 Weak transcription NHEK skin
2 chr1:59096000-59121600 Weak transcription HUVEC blood vessel
3 chr1:59096600-59121600 Weak transcription Gastric stomach
4 chr1:59102000-59130400 Weak transcription Aorta Aorta
5 chr1:59104600-59115600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr1:59104600-59115600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:59108000-59115600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr1:59108200-59130400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr1:59108400-59115600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr1:59108600-59121600 Weak transcription Duodenum Mucosa Duodenum
11 chr1:59109000-59121600 Weak transcription HepG2 liver
12 chr1:59109400-59121600 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr1:59109600-59117800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:59109800-59115400 Weak transcription Primary B cells from cord blood blood
15 chr1:59109800-59115800 Weak transcription H9 Cell Line embryonic stem cell
16 chr1:59110400-59121600 Weak transcription Fetal Adrenal Gland Adrenal Gland
17 chr1:59110400-59123600 Weak transcription HSMMtube muscle
18 chr1:59110600-59119200 Weak transcription Placenta Placenta
19 chr1:59110800-59115400 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr1:59110800-59125200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr1:59111600-59118200 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr1:59112400-59121600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr1:59112600-59116200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr1:59112800-59115400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:59112800-59125600 Weak transcription NHLF lung
26 chr1:59114200-59115800 Enhancers Primary Natural Killer cells fromperipheralblood blood
27 chr1:59114200-59115800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr1:59114200-59117600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
29 chr1:59114400-59115400 Enhancers Primary T helper naive cells from peripheral blood blood
30 chr1:59114400-59115600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
31 chr1:59114400-59115600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
32 chr1:59114400-59115800 Enhancers Primary T cells fromperipheralblood blood
33 chr1:59114400-59115800 Enhancers Primary T helper 17 cells PMA-I stimulated --
34 chr1:59114400-59115800 Enhancers Primary T killer naive cells fromperipheralblood blood
35 chr1:59114400-59115800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr1:59114400-59116200 Enhancers Primary neutrophils fromperipheralblood blood
37 chr1:59114400-59121600 Weak transcription Fetal Muscle Leg muscle
38 chr1:59114400-59130200 Weak transcription Placenta Amnion Placenta Amnion
39 chr1:59114600-59115400 Enhancers Primary mononuclear cells fromperipheralblood Blood
40 chr1:59114600-59115800 Enhancers Primary T helper cells fromperipheralblood blood
41 chr1:59114600-59116600 Enhancers Primary hematopoietic stem cells short term culture blood
42 chr1:59114600-59116600 Weak transcription Dnd41 blood
43 chr1:59114600-59121600 Weak transcription Fetal Muscle Trunk muscle
44 chr1:59114800-59116000 Enhancers Primary T helper cells PMA-I stimulated --
45 chr1:59114800-59116200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
46 chr1:59115000-59117600 Weak transcription HSMM muscle
47 chr1:59115000-59122800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr1:59115000-59132800 Weak transcription Primary T killer memory cells from peripheral blood blood
49 chr1:59115200-59115400 Enhancers Primary hematopoietic stem cells blood
50 chr1:59115200-59115400 Active TSS Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015