Variant report

Variant	rs72678808
Chromosome Location	chr1:59193671-59193672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:59192672..59194770-chr1:59244784..59246788,2	MCF-7	breast:
2	chr1:59191433..59194290-chr1:59244978..59247044,2	K562	blood:
3	chr1:59190245..59193949-chr1:59247631..59250886,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234807	Chromatin interaction
ENSG00000177606	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11207300	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11582157	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11588089	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs15307	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17264915	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2064373	0.95[ASN][1000 genomes]
rs2206764	0.84[ASN][1000 genomes]
rs232778	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232779	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232783	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232788	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232790	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232857	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232862	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232863	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232867	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232877	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232880	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232886	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232901	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232902	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232904	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232905	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs232906	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs232907	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs232908	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs232910	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs232911	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2746077	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2746083	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4912369	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4912372	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs513436	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs542750	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6661922	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs675871	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs688225	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72678814	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2572403	chr1:59193389-59196585	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59183400-59197600	Weak transcription	Aorta	Aorta
2	chr1:59189800-59194200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:59189800-59194400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:59190200-59194400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:59191200-59194400	Enhancers	HMEC	breast
6	chr1:59191800-59194400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:59191800-59194400	Enhancers	HUVEC	blood vessel
8	chr1:59192200-59194400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:59192400-59193800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:59192400-59193800	Enhancers	Primary hematopoietic stem cells	blood
11	chr1:59192400-59193800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:59192400-59193800	Enhancers	Osteobl	bone
13	chr1:59192400-59194200	Enhancers	NHDF-Ad	bronchial
14	chr1:59192400-59194400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:59192400-59194400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:59192400-59194400	Enhancers	HSMM	muscle
17	chr1:59192400-59194400	Enhancers	NHEK	skin
18	chr1:59192600-59193800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr1:59192600-59193800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:59192600-59193800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:59192600-59194400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr1:59192600-59204200	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr1:59192800-59194000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:59192800-59194400	Enhancers	Hela-S3	cervix
25	chr1:59192800-59194400	Enhancers	HepG2	liver
26	chr1:59193000-59193800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr1:59193000-59193800	Enhancers	Placenta Amnion	Placenta Amnion
28	chr1:59193000-59194400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:59193000-59194400	Enhancers	NHLF	lung
30	chr1:59193200-59194000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr1:59193400-59193800	Weak transcription	Left Ventricle	heart
32	chr1:59193600-59194200	Enhancers	NH-A	brain
33	chr1:59193600-59194400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr1:59193600-59197800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:59193600-59200200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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