The 2.0 version of rSNPBase

Variant report

Variant rs6661922
Chromosome Location chr1:59149838-59149839
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59116000-59151600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:59118200-59163400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr1:59119800-59155000 Strong transcription iPS-20b Cell Line embryonic stem cell
4 chr1:59119800-59162200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
5 chr1:59119800-59163200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr1:59120000-59153400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
7 chr1:59121000-59161200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr1:59121400-59161000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr1:59121600-59150000 Strong transcription Primary B cells from peripheral blood blood
10 chr1:59121600-59150000 Strong transcription Primary T cells fromperipheralblood blood
11 chr1:59121600-59150600 Strong transcription Liver Liver
12 chr1:59121600-59161200 Strong transcription Primary T helper cells fromperipheralblood blood
13 chr1:59121600-59161200 Strong transcription Primary T regulatory cells fromperipheralblood blood
14 chr1:59122200-59153400 Weak transcription Esophagus oesophagus
15 chr1:59122400-59153200 Weak transcription Gastric stomach
16 chr1:59122400-59153200 Weak transcription Pancreas Pancrea
17 chr1:59122400-59155200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
18 chr1:59122400-59159400 Weak transcription Right Ventricle heart
19 chr1:59123400-59153800 Strong transcription Primary T helper cells PMA-I stimulated --
20 chr1:59123800-59161800 Strong transcription Dnd41 blood
21 chr1:59124000-59156600 Weak transcription Spleen Spleen
22 chr1:59125000-59162200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr1:59125200-59150000 Strong transcription Fetal Thymus thymus
24 chr1:59125600-59161200 Strong transcription Rectal Mucosa Donor 29 rectum
25 chr1:59126200-59153400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
26 chr1:59129200-59161000 Strong transcription H1 Cell Line embryonic stem cell
27 chr1:59130200-59150200 Weak transcription Stomach Mucosa stomach
28 chr1:59131200-59161000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr1:59131200-59161000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:59131600-59153200 Weak transcription Aorta Aorta
31 chr1:59135600-59150000 Strong transcription Duodenum Mucosa Duodenum
32 chr1:59135600-59152000 Strong transcription Placenta Placenta
33 chr1:59136800-59152200 Strong transcription Primary monocytes fromperipheralblood blood
34 chr1:59137000-59151200 Strong transcription Monocytes-CD14+_RO01746 blood
35 chr1:59137200-59155400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
36 chr1:59138800-59151400 Weak transcription Ovary ovary
37 chr1:59139400-59151400 Weak transcription Brain Angular Gyrus brain
38 chr1:59139400-59156200 Weak transcription Psoas Muscle Psoas
39 chr1:59139600-59151200 Weak transcription Brain Inferior Temporal Lobe brain
40 chr1:59139600-59162800 Weak transcription Fetal Brain Male brain
41 chr1:59139800-59156200 Weak transcription Lung lung
42 chr1:59139800-59159000 Weak transcription Small Intestine intestine
43 chr1:59139800-59162000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
44 chr1:59140200-59158800 Weak transcription Rectal Smooth Muscle rectum
45 chr1:59140400-59157800 Weak transcription Placenta Amnion Placenta Amnion
46 chr1:59140600-59151600 Weak transcription Fetal Intestine Small intestine
47 chr1:59141200-59156200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr1:59141200-59158800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
49 chr1:59141400-59151400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
50 chr1:59141400-59151400 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015