Variant report

Variant	rs233492
Chromosome Location	chr6:14802687-14802688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14789015..14791833-chr6:14802497..14804530,2	K562	blood:
2	chr6:14801951..14804468-chr6:14805275..14807028,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11962545	1.00[EUR][1000 genomes]
rs11969941	1.00[EUR][1000 genomes]
rs16875730	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56871358	1.00[EUR][1000 genomes]
rs6935179	1.00[CEU][hapmap];0.80[YRI][hapmap];1.00[EUR][1000 genomes]
rs6940264	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14793600-14803800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:14798000-14804800	Weak transcription	Right Atrium	heart
3	chr6:14798600-14803800	Weak transcription	NHEK	skin
4	chr6:14798800-14804600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:14799000-14803800	Weak transcription	Placenta	Placenta
6	chr6:14799000-14804800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:14799200-14802800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:14799200-14803000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:14799200-14803000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:14799200-14804200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:14799600-14803000	Weak transcription	Dnd41	blood
12	chr6:14800400-14804800	Weak transcription	Left Ventricle	heart
13	chr6:14800600-14804800	Weak transcription	Brain Germinal Matrix	brain
14	chr6:14800600-14805200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:14800800-14804000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:14800800-14804000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:14800800-14804400	Weak transcription	Fetal Intestine Small	intestine
18	chr6:14800800-14804600	Weak transcription	Brain Anterior Caudate	brain
19	chr6:14800800-14804600	Weak transcription	Fetal Intestine Large	intestine
20	chr6:14800800-14804800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr6:14800800-14804800	Weak transcription	Stomach Mucosa	stomach
22	chr6:14801200-14804000	Weak transcription	Brain Substantia Nigra	brain
23	chr6:14801200-14804000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:14801200-14804400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:14801200-14805000	Weak transcription	Liver	Liver
26	chr6:14801400-14802800	Weak transcription	Adipose Nuclei	Adipose
27	chr6:14801400-14804200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:14802000-14805600	Enhancers	Fetal Thymus	thymus
29	chr6:14802400-14803400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:14802400-14805600	Enhancers	Fetal Brain Male	brain
31	chr6:14802400-14807400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:14802600-14802800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:14802600-14802800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr6:14802600-14802800	Enhancers	NHLF	lung
35	chr6:14802600-14803000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:14802600-14803000	Enhancers	Fetal Lung	lung
37	chr6:14802600-14803000	Enhancers	Rectal Smooth Muscle	rectum
38	chr6:14802600-14803200	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr6:14802600-14803400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:14802600-14803400	Enhancers	Fetal Stomach	stomach
41	chr6:14802600-14804600	Enhancers	Thymus	Thymus
42	chr6:14802600-14805600	Enhancers	Fetal Muscle Leg	muscle
43	chr6:14802600-14805800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:14802600-14807400	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links