Variant report

Variant	rs56871358
Chromosome Location	chr6:14799909-14799910
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14797001..14802228-chr6:14803331..14807791,8	K562	blood:
2	chr6:14788518..14794395-chr6:14794732..14800573,9	K562	blood:
3	chr6:14798686..14800365-chr6:14803406..14805204,2	MCF-7	breast:
4	chr6:14798903..14801568-chr6:15244532..15246539,2	MCF-7	breast:
5	chr6:14799490..14801542-chr6:15104171..15106007,2	K562	blood:
6	chr6:14790824..14794391-chr6:14796656..14800219,3	MCF-7	breast:
7	chr6:14732898..14735132-chr6:14797546..14800169,2	K562	blood:

Variant related genes	Relation type
ENSG00000216754	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11962545	1.00[EUR][1000 genomes]
rs11969941	1.00[EUR][1000 genomes]
rs16875730	1.00[EUR][1000 genomes]
rs2247548	0.85[AFR][1000 genomes]
rs233492	1.00[EUR][1000 genomes]
rs383984	0.85[AFR][1000 genomes]
rs6935179	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940264	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14787800-14802600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:14790800-14802400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:14791400-14802600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:14793600-14803800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:14798000-14800200	Weak transcription	Fetal Thymus	thymus
6	chr6:14798000-14800400	Weak transcription	Adipose Nuclei	Adipose
7	chr6:14798000-14800600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:14798000-14804800	Weak transcription	Right Atrium	heart
9	chr6:14798600-14803800	Weak transcription	NHEK	skin
10	chr6:14798800-14802600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:14798800-14802600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:14798800-14804600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:14799000-14800000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:14799000-14802600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:14799000-14803800	Weak transcription	Placenta	Placenta
16	chr6:14799000-14804800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:14799200-14802800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:14799200-14803000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:14799200-14803000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:14799200-14804200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:14799400-14800400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:14799400-14800400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:14799400-14800800	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:14799600-14800000	Weak transcription	K562	blood
25	chr6:14799600-14800600	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr6:14799600-14803000	Weak transcription	Dnd41	blood

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