Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17649369..17651435-chr11:17694889..17696565,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10832833	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420653	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16934767	1.00[JPT][hapmap]
rs17779771	1.00[ASN][1000 genomes]
rs2249104	1.00[JPT][hapmap]
rs2734554	1.00[JPT][hapmap]
rs34780394	1.00[ASN][1000 genomes]
rs34854265	1.00[ASN][1000 genomes]
rs3858491	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3858492	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3858497	1.00[ASN][1000 genomes]
rs3858500	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3858509	1.00[ASN][1000 genomes]
rs3858510	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3928367	1.00[ASN][1000 genomes]
rs4044329	1.00[JPT][hapmap]
rs4379820	1.00[ASN][1000 genomes]
rs4567433	1.00[ASN][1000 genomes]
rs4756911	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4757566	1.00[ASN][1000 genomes]
rs61880606	1.00[ASN][1000 genomes]
rs6486387	1.00[ASN][1000 genomes]
rs7101815	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7935216	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17694000-17696600	Enhancers	HSMMtube	muscle
2	chr11:17694400-17696600	Enhancers	HSMM	muscle
3	chr11:17694800-17696600	Enhancers	Hela-S3	cervix
4	chr11:17695000-17696600	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search: