Variant report

Variant	rs2344679
Chromosome Location	chr4:62942654-62942655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LPHN3-8	chr4:62941880-62944064	NONHSAT096618

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs17226461	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17292184	0.81[EUR][1000 genomes]
rs17292205	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2193117	0.82[ASN][1000 genomes]
rs2193119	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2344676	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2345596	0.81[ASN][1000 genomes]
rs2881182	0.81[ASN][1000 genomes]
rs34093205	0.82[AMR][1000 genomes]
rs35398119	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs41452945	0.82[ASN][1000 genomes]
rs4452459	0.81[ASN][1000 genomes]
rs4464599	0.81[ASN][1000 genomes]
rs4508922	0.81[ASN][1000 genomes]
rs4623035	0.81[ASN][1000 genomes]
rs4860452	0.81[EUR][1000 genomes]
rs4860453	0.82[ASN][1000 genomes]
rs55738302	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56094818	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56229538	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56272631	0.81[EUR][1000 genomes]
rs56287213	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56373590	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56788324	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57737675	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58742242	0.82[ASN][1000 genomes]
rs60042181	0.81[ASN][1000 genomes]
rs60443220	0.82[AMR][1000 genomes]
rs60732848	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60951852	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61686752	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6817335	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6841161	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6854221	0.89[AMR][1000 genomes]
rs713284	0.81[EUR][1000 genomes]
rs7659296	0.81[EUR][1000 genomes]
rs7676979	0.81[EUR][1000 genomes]
rs7676995	0.81[ASN][1000 genomes]
rs7697407	0.81[EUR][1000 genomes]
rs7698238	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012574	chr4:62844264-62954187	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv879078	chr4:62923797-63054757	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62936800-62943200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:62937000-62943200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:62939600-62943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:62939800-62943000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:62940200-62942800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:62941000-62942800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:62942600-62943800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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