Variant report

Variant	rs56094818
Chromosome Location	chr4:62999427-62999428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs17226461	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17226496	0.90[ASN][1000 genomes]
rs17292184	0.94[EUR][1000 genomes]
rs17292205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17292254	0.90[ASN][1000 genomes]
rs2193117	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2193119	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2344676	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2344679	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2345596	0.91[ASN][1000 genomes]
rs2881182	0.91[ASN][1000 genomes]
rs34093205	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35398119	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41452945	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4452459	0.91[ASN][1000 genomes]
rs4464599	0.91[ASN][1000 genomes]
rs4508922	0.91[ASN][1000 genomes]
rs4513599	0.90[ASN][1000 genomes]
rs4623035	0.91[ASN][1000 genomes]
rs4860452	0.94[EUR][1000 genomes]
rs4860453	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55738302	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56229538	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56272631	0.94[EUR][1000 genomes]
rs56287213	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56373590	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56788324	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57737675	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58742242	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60042181	0.91[ASN][1000 genomes]
rs60443220	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60732848	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60951852	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61686752	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6817335	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6819199	0.88[ASN][1000 genomes]
rs6841161	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6854221	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs713284	0.94[EUR][1000 genomes]
rs72498878	0.87[ASN][1000 genomes]
rs7659296	0.94[EUR][1000 genomes]
rs7676979	0.94[EUR][1000 genomes]
rs7676995	0.91[ASN][1000 genomes]
rs7697407	0.94[EUR][1000 genomes]
rs7698238	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879078	chr4:62923797-63054757	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv594332	chr4:62976756-63034074	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1005620	chr4:62978115-63035387	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1013327	chr4:62989426-63149048	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62999000-62999600	Enhancers	Fetal Heart	heart
2	chr4:62999000-63000400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:62999000-63001200	Enhancers	NH-A	brain
4	chr4:62999200-62999800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:62999200-63003400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:62999400-62999600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:62999400-62999800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:62999400-62999800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr4:62999400-63000800	Active TSS	Left Ventricle	heart
10	chr4:62999400-63001800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:62999400-63001800	Active TSS	Right Ventricle	heart
12	chr4:62999400-63002800	Active TSS	Right Atrium	heart

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