Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1122336	0.92[CEU][hapmap]
rs12499940	0.91[CEU][hapmap]
rs12508688	0.92[CEU][hapmap]
rs12645211	0.92[CEU][hapmap]
rs17292184	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17292205	0.94[EUR][1000 genomes]
rs2344676	0.94[EUR][1000 genomes]
rs2344679	0.81[EUR][1000 genomes]
rs41452945	1.00[CEU][hapmap]
rs41475546	1.00[CEU][hapmap]
rs4860452	1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56094818	0.94[EUR][1000 genomes]
rs56272631	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56373590	0.94[EUR][1000 genomes]
rs57737675	0.82[EUR][1000 genomes]
rs6817335	0.82[EUR][1000 genomes]
rs6854221	0.82[EUR][1000 genomes]
rs7659296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676979	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7697407	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879078	chr4:62923797-63054757	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv594332	chr4:62976756-63034074	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1005620	chr4:62978115-63035387	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1013327	chr4:62989426-63149048	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62999200-63003400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:63000800-63004000	Weak transcription	Left Ventricle	heart
3	chr4:63001800-63004000	Weak transcription	Right Ventricle	heart
4	chr4:63002600-63003600	Enhancers	Fetal Heart	heart
5	chr4:63002800-63004000	Weak transcription	Right Atrium	heart

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