Variant report

Variant	rs234608
Chromosome Location	chr17:15583555-15583556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15582137..15583945-chr17:15586739..15588630,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221926	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs151315	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs163368	0.92[CHB][hapmap];0.91[CHD][hapmap]
rs163378	0.85[EUR][1000 genomes]
rs163379	0.85[EUR][1000 genomes]
rs163381	0.86[ASN][1000 genomes]
rs163382	0.89[CEU][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs163383	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs163384	0.89[CEU][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs163386	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs163387	0.86[EUR][1000 genomes]
rs163388	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs163389	0.86[ASN][1000 genomes]
rs163391	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs186840	0.80[ASN][1000 genomes]
rs189280	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs234607	0.92[CHB][hapmap];0.95[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
7	nsv520426	chr17:15554561-15647723	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv522130	chr17:15563393-15592762	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv518620	chr17:15563393-15608194	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15555000-15587000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:15555000-15587000	Weak transcription	Gastric	stomach
3	chr17:15555200-15587000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:15555400-15585800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr17:15555400-15586600	Weak transcription	Brain Angular Gyrus	brain
6	chr17:15555400-15586600	Weak transcription	Thymus	Thymus
7	chr17:15555400-15587000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr17:15555600-15586800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr17:15555600-15586800	Weak transcription	NHDF-Ad	bronchial
10	chr17:15555600-15587000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr17:15555600-15587200	Weak transcription	Aorta	Aorta
12	chr17:15556600-15587000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr17:15558800-15586600	Weak transcription	Brain Germinal Matrix	brain
14	chr17:15558800-15587000	Weak transcription	Ovary	ovary
15	chr17:15558800-15587000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr17:15558800-15587000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr17:15559000-15585800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr17:15562600-15586400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr17:15563400-15586800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr17:15563400-15587000	Weak transcription	Right Ventricle	heart
21	chr17:15563800-15586200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr17:15563800-15587000	Weak transcription	Pancreas	Pancrea
23	chr17:15564000-15587000	Weak transcription	Esophagus	oesophagus
24	chr17:15565200-15586200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr17:15566400-15586600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr17:15566600-15587000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr17:15567200-15586000	Weak transcription	GM12878-XiMat	blood
28	chr17:15567200-15586600	Weak transcription	NHEK	skin
29	chr17:15567400-15583800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr17:15567400-15586800	Weak transcription	NHLF	lung
31	chr17:15567800-15586600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr17:15567800-15586800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr17:15568000-15585800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr17:15568000-15586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr17:15568000-15586000	Weak transcription	HepG2	liver
36	chr17:15568000-15586600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr17:15568000-15586600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr17:15568000-15586600	Weak transcription	Osteobl	bone
39	chr17:15568000-15587000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr17:15568000-15587000	Weak transcription	Fetal Intestine Large	intestine
41	chr17:15568000-15587000	Weak transcription	HSMM	muscle
42	chr17:15568200-15585800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr17:15568200-15586400	Weak transcription	Fetal Muscle Leg	muscle
44	chr17:15568200-15586400	Weak transcription	Fetal Stomach	stomach
45	chr17:15568200-15586600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr17:15568200-15586800	Weak transcription	Fetal Intestine Small	intestine
47	chr17:15568200-15586800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr17:15568200-15586800	Weak transcription	NH-A	brain
49	chr17:15568200-15587000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr17:15568200-15587000	Weak transcription	Primary T cells from cord blood	blood

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