Variant report

Variant	rs2353035
Chromosome Location	chr6:107099666-107099667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10499046	1.00[CEU][hapmap]
rs12524955	1.00[CEU][hapmap]
rs12524961	1.00[CEU][hapmap]
rs12525436	1.00[CEU][hapmap]
rs12527773	1.00[CEU][hapmap]
rs12663120	1.00[CEU][hapmap]
rs17067226	1.00[CEU][hapmap]
rs17067245	1.00[CEU][hapmap]
rs17067371	1.00[CEU][hapmap]
rs17067393	1.00[CEU][hapmap]
rs17067432	1.00[CEU][hapmap]
rs17067445	1.00[CEU][hapmap]
rs17067469	1.00[CEU][hapmap]
rs17067613	1.00[CEU][hapmap]
rs17067614	1.00[CEU][hapmap]
rs1979347	1.00[CEU][hapmap]
rs2353041	1.00[CEU][hapmap]
rs3761800	1.00[CEU][hapmap]
rs3804339	1.00[CEU][hapmap]
rs4363071	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107100200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:107078600-107100400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:107078600-107103800	Weak transcription	Fetal Brain Male	brain
4	chr6:107078600-107104200	Weak transcription	Brain Angular Gyrus	brain
5	chr6:107078600-107106200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:107078600-107106600	Weak transcription	NH-A	brain
7	chr6:107078600-107110200	Weak transcription	NHLF	lung
8	chr6:107078600-107110800	Weak transcription	Fetal Heart	heart
9	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
11	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:107085400-107100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:107086400-107104400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:107087400-107106200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:107087800-107104000	Strong transcription	Dnd41	blood
18	chr6:107088000-107104000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:107088000-107106000	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:107088000-107108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:107088200-107106200	Weak transcription	Small Intestine	intestine
22	chr6:107089000-107104600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr6:107089000-107105800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr6:107090000-107109000	Strong transcription	Liver	Liver
25	chr6:107090600-107100000	Weak transcription	Gastric	stomach
26	chr6:107090600-107100000	Weak transcription	Right Ventricle	heart
27	chr6:107090800-107100400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:107090800-107108000	Weak transcription	Pancreas	Pancrea
29	chr6:107091000-107100000	Weak transcription	HUVEC	blood vessel
30	chr6:107091000-107104000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:107091400-107100000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr6:107091400-107111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr6:107091600-107100200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:107092000-107104400	Weak transcription	Esophagus	oesophagus
35	chr6:107092000-107106200	Weak transcription	Psoas Muscle	Psoas
36	chr6:107092200-107107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:107092400-107100200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:107092400-107100200	Weak transcription	Brain Hippocampus Middle	brain
39	chr6:107092400-107104000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:107092600-107100000	Weak transcription	Fetal Stomach	stomach
41	chr6:107092600-107100200	Weak transcription	Thymus	Thymus
42	chr6:107092600-107101200	Weak transcription	Aorta	Aorta
43	chr6:107092600-107104400	Weak transcription	Spleen	Spleen
44	chr6:107092800-107100000	Weak transcription	Ovary	ovary
45	chr6:107092800-107101200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:107092800-107116400	Weak transcription	Brain Substantia Nigra	brain
47	chr6:107093000-107100000	Weak transcription	Colon Smooth Muscle	Colon
48	chr6:107094000-107100000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr6:107094000-107100200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:107094000-107103600	Weak transcription	Colonic Mucosa	Colon

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