Variant report

Variant	rs17067613
Chromosome Location	chr6:107115225-107115226
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107113408..107116233-chr6:107118216..107122010,4	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10485221	0.83[AMR][1000 genomes]
rs10499046	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12523666	0.85[CHB][hapmap]
rs12523769	1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12524955	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12524961	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12525004	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12525311	0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs12525436	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12526024	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs12527773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12528136	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs12528406	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs12528553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12529961	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12530093	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12663120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12665651	0.95[AMR][1000 genomes]
rs17067217	0.85[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes]
rs17067219	0.92[CHB][hapmap];0.88[CHD][hapmap];0.91[EUR][1000 genomes]
rs17067226	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[EUR][1000 genomes]
rs17067245	1.00[CEU][hapmap];0.92[CHB][hapmap];0.95[EUR][1000 genomes]
rs17067371	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17067393	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17067395	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17067428	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs17067432	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17067435	0.92[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17067443	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17067445	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17067469	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17067614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17567332	0.83[AMR][1000 genomes]
rs1979347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2353035	1.00[CEU][hapmap]
rs2353041	1.00[CEU][hapmap]
rs2792467	0.91[EUR][1000 genomes]
rs28537731	0.80[AMR][1000 genomes]
rs2883074	0.92[AMR][1000 genomes]
rs3761800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3789230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3804339	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4276539	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4363071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946766	1.00[EUR][1000 genomes]
rs4946777	0.83[AMR][1000 genomes]
rs56664576	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56725742	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56845422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58482231	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59480706	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59668897	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9372139	0.97[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv516902	chr6:107104374-107115394	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
2	chr6:107092800-107116400	Weak transcription	Brain Substantia Nigra	brain
3	chr6:107104800-107116200	Weak transcription	Brain Angular Gyrus	brain
4	chr6:107104800-107116400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:107105000-107118000	Weak transcription	Esophagus	oesophagus
6	chr6:107105000-107118000	Weak transcription	Gastric	stomach
7	chr6:107106600-107126200	Weak transcription	Psoas Muscle	Psoas
8	chr6:107107000-107118000	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:107107400-107115400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:107107400-107115600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:107107800-107116400	Weak transcription	NHDF-Ad	bronchial
12	chr6:107108000-107117400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:107108200-107116400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:107108400-107116200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:107108400-107118000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:107109000-107116800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:107109400-107119200	Weak transcription	Lung	lung
18	chr6:107110000-107116400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:107110000-107118800	Weak transcription	Fetal Intestine Small	intestine
20	chr6:107110400-107115400	Strong transcription	Primary T cells from cord blood	blood
21	chr6:107110400-107115600	Strong transcription	Fetal Thymus	thymus
22	chr6:107110400-107115800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:107111000-107115600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:107111200-107115400	Weak transcription	Osteobl	bone
25	chr6:107111600-107115400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:107111600-107115600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:107111600-107115600	Weak transcription	Brain Anterior Caudate	brain
28	chr6:107111600-107116200	Weak transcription	Aorta	Aorta
29	chr6:107111600-107116200	Weak transcription	Thymus	Thymus
30	chr6:107111600-107116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:107111600-107116400	Weak transcription	Small Intestine	intestine
32	chr6:107111600-107118000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:107111800-107116200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:107111800-107116200	Weak transcription	HepG2	liver
35	chr6:107111800-107116400	Weak transcription	Ovary	ovary
36	chr6:107111800-107116600	Weak transcription	Brain Germinal Matrix	brain
37	chr6:107111800-107116800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:107111800-107122200	Weak transcription	A549	lung
39	chr6:107112000-107115400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr6:107112000-107118000	Weak transcription	Right Ventricle	heart
41	chr6:107112000-107118200	Weak transcription	HSMMtube	muscle
42	chr6:107112000-107119800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:107112000-107121800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr6:107112200-107116400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:107112400-107116200	Weak transcription	Adipose Nuclei	Adipose
46	chr6:107112400-107117000	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:107112400-107117000	Weak transcription	Fetal Heart	heart
48	chr6:107112600-107116600	Weak transcription	Fetal Kidney	kidney
49	chr6:107112800-107124200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr6:107113000-107115400	Enhancers	Primary monocytes fromperipheralblood	blood

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