Variant report

Variant	rs10485221
Chromosome Location	chr6:107145381-107145382
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107144987..107147754-chr6:107212345..107214476,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10499046	1.00[CEU][hapmap]
rs11965826	0.96[EUR][1000 genomes]
rs11970567	0.80[EUR][1000 genomes]
rs12111123	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12524955	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12524961	1.00[CEU][hapmap]
rs12525436	1.00[CEU][hapmap]
rs12527773	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs12528553	0.83[AMR][1000 genomes]
rs12661223	1.00[EUR][1000 genomes]
rs12663120	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs12665651	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17052232	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17067219	1.00[GIH][hapmap]
rs17067226	1.00[CEU][hapmap]
rs17067245	1.00[CEU][hapmap]
rs17067371	1.00[CEU][hapmap]
rs17067393	1.00[CEU][hapmap]
rs17067432	1.00[CEU][hapmap]
rs17067445	1.00[CEU][hapmap]
rs17067469	1.00[CEU][hapmap]
rs17067613	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs17067614	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs17567332	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1979347	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs2353035	1.00[CEU][hapmap]
rs2353041	1.00[CEU][hapmap]
rs2354224	0.81[AMR][1000 genomes]
rs28537731	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34702989	1.00[EUR][1000 genomes]
rs35913079	1.00[EUR][1000 genomes]
rs3761800	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs3789230	0.83[AMR][1000 genomes]
rs3804339	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs4276539	0.86[AMR][1000 genomes]
rs4363071	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs4946777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4946781	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56845422	0.83[AMR][1000 genomes]
rs58169264	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59668897	0.83[AMR][1000 genomes]
rs59742959	0.82[EUR][1000 genomes]
rs60838249	0.82[EUR][1000 genomes]
rs6914551	1.00[EUR][1000 genomes]
rs6934849	1.00[EUR][1000 genomes]
rs73511912	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7357000	0.96[EUR][1000 genomes]
rs9372139	0.86[AMR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107136000-107148200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:107141000-107146000	Weak transcription	Pancreas	Pancrea
3	chr6:107141200-107148200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:107142000-107147600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:107142600-107148200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:107142600-107157400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:107142800-107148200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:107143200-107147200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:107144000-107146600	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:107144600-107145400	Weak transcription	Primary B cells from cord blood	blood

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