Variant report

Variant	rs12665651
Chromosome Location	chr6:107136002-107136003
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107135242..107137861-chr6:107141740..107143313,2	K562	blood:
2	chr6:107072436..107074648-chr6:107134526..107136457,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10485221	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10499046	1.00[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes]
rs11965826	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11970567	0.80[EUR][1000 genomes]
rs12111123	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12523769	0.82[AMR][1000 genomes]
rs12524955	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs12524961	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs12525004	0.92[JPT][hapmap]
rs12525311	0.83[JPT][hapmap]
rs12525436	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes]
rs12526024	0.83[JPT][hapmap]
rs12527773	1.00[CEU][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes]
rs12528136	0.83[JPT][hapmap]
rs12528406	0.83[JPT][hapmap]
rs12528553	0.95[AMR][1000 genomes]
rs12529961	0.83[JPT][hapmap]
rs12530093	0.81[JPT][hapmap]
rs12661223	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12663120	1.00[CEU][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes]
rs17052232	0.82[EUR][1000 genomes]
rs17067226	1.00[CEU][hapmap]
rs17067245	1.00[CEU][hapmap]
rs17067371	1.00[CEU][hapmap];0.82[AMR][1000 genomes]
rs17067393	1.00[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes]
rs17067395	0.83[JPT][hapmap]
rs17067428	0.83[JPT][hapmap]
rs17067432	1.00[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes]
rs17067435	0.83[JPT][hapmap];0.83[MEX][hapmap]
rs17067443	0.83[JPT][hapmap]
rs17067445	1.00[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes]
rs17067469	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes]
rs17067613	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes]
rs17067614	1.00[CEU][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes]
rs17567332	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1979347	1.00[CEU][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes]
rs2353035	1.00[CEU][hapmap]
rs2353041	1.00[CEU][hapmap]
rs28537731	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2883074	0.87[AMR][1000 genomes]
rs34702989	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35913079	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3761800	1.00[CEU][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes]
rs3789230	0.95[AMR][1000 genomes]
rs3804339	1.00[CEU][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes]
rs4276539	0.97[AMR][1000 genomes]
rs4363071	1.00[CEU][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes]
rs4946777	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4946781	0.82[EUR][1000 genomes]
rs56664576	0.82[AMR][1000 genomes]
rs56725742	0.82[AMR][1000 genomes]
rs56845422	0.95[AMR][1000 genomes]
rs58169264	0.88[EUR][1000 genomes]
rs58482231	0.82[AMR][1000 genomes]
rs59480706	0.82[AMR][1000 genomes]
rs59668897	0.95[AMR][1000 genomes]
rs59742959	0.82[EUR][1000 genomes]
rs60838249	0.82[EUR][1000 genomes]
rs6914551	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6934849	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73511912	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7357000	0.96[EUR][1000 genomes]
rs9372139	0.97[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107134000-107139800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:107134400-107139600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:107134800-107136200	Weak transcription	Stomach Mucosa	stomach
4	chr6:107135200-107136200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:107135200-107136400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:107135400-107136200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:107135400-107136200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:107135400-107136600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:107135600-107136200	Enhancers	Liver	Liver
10	chr6:107135800-107136400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:107135800-107136400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:107135800-107136400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:107135800-107136400	Enhancers	HepG2	liver
14	chr6:107135800-107136800	Enhancers	Hela-S3	cervix
15	chr6:107135800-107137400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:107136000-107136200	Enhancers	Brain Anterior Caudate	brain
17	chr6:107136000-107136200	Enhancers	HSMMtube	muscle
18	chr6:107136000-107136400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:107136000-107136400	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:107136000-107136400	Enhancers	Osteobl	bone
21	chr6:107136000-107136600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:107136000-107136800	Enhancers	GM12878-XiMat	blood
23	chr6:107136000-107137000	Enhancers	Primary B cells from cord blood	blood
24	chr6:107136000-107137000	Enhancers	Fetal Intestine Small	intestine
25	chr6:107136000-107137600	Enhancers	Primary B cells from peripheral blood	blood
26	chr6:107136000-107148200	Weak transcription	H9 Cell Line	embryonic stem cell

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