Variant report

Variant	rs17567332
Chromosome Location	chr6:107142145-107142146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:107142142-107142642	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107135242..107137861-chr6:107141740..107143313,2	K562	blood:

Variant related genes	Relation type
ENSG00000229654	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10485221	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11965826	0.91[EUR][1000 genomes]
rs12111123	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12527773	0.83[AMR][1000 genomes]
rs12528553	0.83[AMR][1000 genomes]
rs12661223	0.87[EUR][1000 genomes]
rs12663120	0.83[AMR][1000 genomes]
rs12665651	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17052232	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17067613	0.83[AMR][1000 genomes]
rs17067614	0.83[AMR][1000 genomes]
rs1977148	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1979347	0.83[AMR][1000 genomes]
rs2354224	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28537731	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34702989	0.87[EUR][1000 genomes]
rs35913079	0.87[EUR][1000 genomes]
rs3761800	0.83[AMR][1000 genomes]
rs3789230	0.83[AMR][1000 genomes]
rs3804339	0.80[AMR][1000 genomes]
rs4276539	0.85[AMR][1000 genomes]
rs4363071	0.83[AMR][1000 genomes]
rs4946777	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4946781	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56845422	0.83[AMR][1000 genomes]
rs59668897	0.83[AMR][1000 genomes]
rs59742959	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60838249	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6914551	0.87[EUR][1000 genomes]
rs6934849	0.87[EUR][1000 genomes]
rs73511912	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7357000	0.91[EUR][1000 genomes]
rs9372139	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107136000-107148200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:107139000-107142200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:107139000-107142200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:107139000-107142400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:107139000-107142600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:107139000-107143000	Enhancers	Stomach Mucosa	stomach
7	chr6:107139200-107142600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:107139200-107142800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:107139400-107142200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr6:107139400-107142400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:107139800-107142600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:107140000-107142400	Enhancers	Fetal Muscle Leg	muscle
13	chr6:107140600-107142400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr6:107140800-107142600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:107141000-107142200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:107141000-107142200	Weak transcription	Brain Anterior Caudate	brain
17	chr6:107141000-107142400	Weak transcription	Small Intestine	intestine
18	chr6:107141000-107146000	Weak transcription	Pancreas	Pancrea
19	chr6:107141200-107148200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:107141800-107142600	Enhancers	Duodenum Mucosa	Duodenum
21	chr6:107141800-107142800	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:107141800-107143000	Enhancers	Primary B cells from cord blood	blood
23	chr6:107141800-107143000	Enhancers	Fetal Intestine Small	intestine
24	chr6:107142000-107142400	Enhancers	NHEK	skin
25	chr6:107142000-107142600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:107142000-107147600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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