Variant report

Variant	rs4276539
Chromosome Location	chr6:107124516-107124517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10485221	0.86[AMR][1000 genomes]
rs10499046	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11970567	0.84[EUR][1000 genomes]
rs12523769	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12524955	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12524961	0.85[AMR][1000 genomes]
rs12525436	0.85[AMR][1000 genomes]
rs12527773	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12528553	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12663120	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12665651	0.97[AMR][1000 genomes]
rs17067226	0.82[EUR][1000 genomes]
rs17067371	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17067393	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17067432	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17067445	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17067469	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17067613	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17067614	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17567332	0.85[AMR][1000 genomes]
rs1979347	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28537731	0.83[AMR][1000 genomes]
rs2883074	0.90[AMR][1000 genomes]
rs3761800	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3789230	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3804339	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4363071	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4946766	0.82[EUR][1000 genomes]
rs4946777	0.86[AMR][1000 genomes]
rs56664576	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56725742	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56845422	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58482231	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59480706	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59668897	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9372139	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9400047	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2608808	chr6:107123698-107125197	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv989863	chr6:107123802-107124897	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3351750	chr6:107123809-107125757	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2180999	chr6:107124346-107125030	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3442652	chr6:107124413-107124935	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3473153	chr6:107124420-107124908	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3511849	chr6:107124431-107124937	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3511851	chr6:107124444-107124886	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3511850	chr6:107124446-107124866	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3473154	chr6:107124452-107124899	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3473155	chr6:107124461-107124893	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3473152	chr6:107124466-107124856	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3511848	chr6:107124467-107124888	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3511847	chr6:107124476-107124879	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
2	chr6:107106600-107126200	Weak transcription	Psoas Muscle	Psoas
3	chr6:107114000-107125400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:107116800-107124800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:107116800-107125000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:107117600-107130800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:107121000-107125200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:107121000-107125200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:107121200-107125400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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