Variant report
| Variant | rs9372139 |
|---|---|
| Chromosome Location | chr6:107128985-107128986 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:107128712..107130590-chr6:107191547..107193827,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10485221 | 0.86[AMR][1000 genomes] |
| rs10499046 | 0.85[AMR][1000 genomes] |
| rs11970567 | 0.92[EUR][1000 genomes] |
| rs12523769 | 0.85[AMR][1000 genomes] |
| rs12524955 | 0.87[AMR][1000 genomes] |
| rs12524961 | 0.85[AMR][1000 genomes] |
| rs12525436 | 0.85[AMR][1000 genomes] |
| rs12527773 | 0.97[AMR][1000 genomes] |
| rs12528553 | 0.97[AMR][1000 genomes] |
| rs12663120 | 0.97[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12665651 | 0.97[AMR][1000 genomes] |
| rs17067371 | 0.85[AMR][1000 genomes] |
| rs17067393 | 0.85[AMR][1000 genomes] |
| rs17067432 | 0.85[AMR][1000 genomes] |
| rs17067445 | 0.85[AMR][1000 genomes] |
| rs17067469 | 0.87[AMR][1000 genomes] |
| rs17067613 | 0.97[AMR][1000 genomes] |
| rs17067614 | 0.97[AMR][1000 genomes] |
| rs17567332 | 0.85[AMR][1000 genomes] |
| rs1979347 | 0.97[AMR][1000 genomes] |
| rs28537731 | 0.83[AMR][1000 genomes] |
| rs2883074 | 0.90[AMR][1000 genomes] |
| rs3761800 | 0.97[AMR][1000 genomes] |
| rs3789230 | 0.97[AMR][1000 genomes] |
| rs3804339 | 0.95[AMR][1000 genomes] |
| rs4276539 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4363071 | 0.97[AMR][1000 genomes] |
| rs4946777 | 0.86[AMR][1000 genomes] |
| rs56664576 | 0.85[AMR][1000 genomes] |
| rs56725742 | 0.85[AMR][1000 genomes] |
| rs56845422 | 0.97[AMR][1000 genomes] |
| rs58482231 | 0.85[AMR][1000 genomes] |
| rs59480706 | 0.85[AMR][1000 genomes] |
| rs59668897 | 0.97[AMR][1000 genomes] |
| rs9400047 | 0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532047 | chr6:106591482-107143252 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:107117600-107130800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr6:107126000-107130600 | Weak transcription | Primary B cells from cord blood | blood |
| 3 | chr6:107126200-107130400 | Weak transcription | Primary B cells from peripheral blood | blood |
