Variant report

Variant	rs59668897
Chromosome Location	chr6:107095365-107095366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107095011..107097957-chr6:107101360..107102981,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10485221	0.83[AMR][1000 genomes]
rs10499046	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12523769	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12524955	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12524961	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12525436	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12527773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12528553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12663120	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12665651	0.95[AMR][1000 genomes]
rs17067217	0.91[EUR][1000 genomes]
rs17067219	0.91[EUR][1000 genomes]
rs17067226	1.00[EUR][1000 genomes]
rs17067245	0.95[EUR][1000 genomes]
rs17067371	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17067393	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17067432	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17067445	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17067469	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17067613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17067614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17567332	0.83[AMR][1000 genomes]
rs1979347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792467	0.91[EUR][1000 genomes]
rs28537731	0.80[AMR][1000 genomes]
rs2883074	0.92[AMR][1000 genomes]
rs3761800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3804339	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4276539	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4363071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4946766	1.00[EUR][1000 genomes]
rs4946777	0.83[AMR][1000 genomes]
rs56664576	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56725742	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56845422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58482231	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59480706	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9372139	0.97[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107100200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr6:107078600-107100400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:107078600-107103800	Weak transcription	Fetal Brain Male	brain
4	chr6:107078600-107104200	Weak transcription	Brain Angular Gyrus	brain
5	chr6:107078600-107106200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:107078600-107106600	Weak transcription	NH-A	brain
7	chr6:107078600-107110200	Weak transcription	NHLF	lung
8	chr6:107078600-107110800	Weak transcription	Fetal Heart	heart
9	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
11	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:107085400-107100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:107086400-107104400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr6:107086600-107098200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:107087400-107106200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:107087600-107095600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:107087800-107095400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:107087800-107104000	Strong transcription	Dnd41	blood
21	chr6:107088000-107095400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:107088000-107104000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:107088000-107106000	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:107088000-107108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:107088200-107106200	Weak transcription	Small Intestine	intestine
26	chr6:107088400-107095600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:107089000-107095600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:107089000-107104600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr6:107089000-107105800	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr6:107089200-107097200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:107090000-107095600	Strong transcription	Placenta	Placenta
32	chr6:107090000-107109000	Strong transcription	Liver	Liver
33	chr6:107090200-107098600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:107090600-107100000	Weak transcription	Gastric	stomach
35	chr6:107090600-107100000	Weak transcription	Right Ventricle	heart
36	chr6:107090800-107100400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:107090800-107108000	Weak transcription	Pancreas	Pancrea
38	chr6:107091000-107100000	Weak transcription	HUVEC	blood vessel
39	chr6:107091000-107104000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:107091200-107097800	Weak transcription	Hela-S3	cervix
41	chr6:107091200-107098000	Weak transcription	HepG2	liver
42	chr6:107091200-107099200	Weak transcription	Fetal Kidney	kidney
43	chr6:107091400-107100000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr6:107091400-107111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:107091600-107100200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr6:107092000-107104400	Weak transcription	Esophagus	oesophagus
47	chr6:107092000-107106200	Weak transcription	Psoas Muscle	Psoas
48	chr6:107092200-107107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:107092400-107097200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:107092400-107100200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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