Variant report

Variant	rs17052232
Chromosome Location	chr6:107164225-107164226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-QRSL1-2	chr6:107164110-107167451	XLOC_005414
2	lnc-QRSL1-2	chr6:107164110-107166228	NONHSAT114254

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10485221	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11965826	0.86[EUR][1000 genomes]
rs12111123	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12661223	0.82[EUR][1000 genomes]
rs12665651	0.82[EUR][1000 genomes]
rs17567332	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1977148	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2354224	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28537731	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34702989	0.82[EUR][1000 genomes]
rs35913079	0.82[EUR][1000 genomes]
rs4946777	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4946781	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59742959	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60838249	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6914551	0.82[EUR][1000 genomes]
rs6934849	0.82[EUR][1000 genomes]
rs73511912	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7357000	0.86[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107158800-107169200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:107161800-107164600	Weak transcription	Fetal Intestine Large	intestine
3	chr6:107162200-107169400	Weak transcription	Small Intestine	intestine
4	chr6:107162400-107164800	Weak transcription	HepG2	liver
5	chr6:107162600-107169200	Weak transcription	Pancreas	Pancrea
6	chr6:107162800-107164800	Weak transcription	Liver	Liver
7	chr6:107163200-107164600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:107163200-107164800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:107163600-107164400	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr6:107163600-107164400	Flanking Active TSS	NHEK	skin
11	chr6:107163600-107164600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:107163600-107164600	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr6:107163600-107165000	Enhancers	HMEC	breast
14	chr6:107163600-107165600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:107163800-107165400	Enhancers	Duodenum Mucosa	Duodenum
16	chr6:107163800-107165800	Enhancers	Stomach Mucosa	stomach
17	chr6:107164000-107164400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:107164000-107165400	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr6:107164000-107165600	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:107164000-107165600	Enhancers	Fetal Intestine Small	intestine
21	chr6:107164200-107165000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:107164200-107169200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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