Variant report

Variant	rs12111123
Chromosome Location	chr6:107160393-107160394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107160238..107161871-chr6:107170871..107172694,2	MCF-7	breast:
2	chr6:107147848..107149506-chr6:107159132..107161545,2	MCF-7	breast:

rs_ID	r²[population]
rs10485221	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10499046	1.00[CEU][hapmap]
rs11965826	0.86[EUR][1000 genomes]
rs12524955	1.00[CEU][hapmap]
rs12524961	1.00[CEU][hapmap]
rs12525436	1.00[CEU][hapmap]
rs12527773	1.00[CEU][hapmap]
rs12661223	0.82[EUR][1000 genomes]
rs12663120	1.00[CEU][hapmap]
rs12665651	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17052232	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17067226	1.00[CEU][hapmap]
rs17067245	1.00[CEU][hapmap]
rs17067371	1.00[CEU][hapmap]
rs17067393	1.00[CEU][hapmap]
rs17067432	1.00[CEU][hapmap]
rs17067445	1.00[CEU][hapmap]
rs17067469	1.00[CEU][hapmap]
rs17067613	1.00[CEU][hapmap]
rs17067614	1.00[CEU][hapmap]
rs17567332	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1977148	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1979347	1.00[CEU][hapmap]
rs2353035	1.00[CEU][hapmap]
rs2353041	1.00[CEU][hapmap]
rs2354224	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28537731	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34702989	0.82[EUR][1000 genomes]
rs35913079	0.82[EUR][1000 genomes]
rs3761800	1.00[CEU][hapmap]
rs3804339	1.00[CEU][hapmap]
rs4363071	1.00[CEU][hapmap]
rs4946777	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4946781	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59742959	1.00[EUR][1000 genomes]
rs60838249	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914551	0.82[EUR][1000 genomes]
rs6934849	0.82[EUR][1000 genomes]
rs73511912	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7357000	0.86[EUR][1000 genomes]

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107151000-107162200	Weak transcription	Fetal Kidney	kidney
2	chr6:107152400-107161400	Weak transcription	Pancreas	Pancrea
3	chr6:107154200-107160400	Weak transcription	Primary B cells from cord blood	blood
4	chr6:107158400-107161200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:107158600-107162200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:107158800-107160800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:107158800-107163600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:107158800-107169200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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