Variant report

Variant	rs6934849
Chromosome Location	chr6:107134772-107134773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:107072436..107074648-chr6:107134526..107136457,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10485221	1.00[EUR][1000 genomes]
rs10499046	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs11965826	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11970567	0.80[EUR][1000 genomes]
rs12111123	0.82[EUR][1000 genomes]
rs12524955	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap]
rs12524961	1.00[CEU][hapmap]
rs12525004	0.92[JPT][hapmap]
rs12525311	0.83[JPT][hapmap]
rs12525436	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs12526024	0.83[JPT][hapmap]
rs12527773	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs12528136	0.83[JPT][hapmap]
rs12528406	0.83[JPT][hapmap]
rs12529961	0.83[JPT][hapmap]
rs12530093	0.81[JPT][hapmap]
rs12661223	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12663120	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs12665651	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17052232	0.82[EUR][1000 genomes]
rs17067226	1.00[CEU][hapmap]
rs17067245	1.00[CEU][hapmap]
rs17067371	1.00[CEU][hapmap]
rs17067393	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs17067395	0.83[JPT][hapmap]
rs17067428	0.83[JPT][hapmap]
rs17067432	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs17067435	0.83[JPT][hapmap]
rs17067443	0.83[JPT][hapmap]
rs17067445	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs17067469	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs17067613	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[TSI][hapmap]
rs17067614	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs17567332	0.87[EUR][1000 genomes]
rs1979347	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs2353035	1.00[CEU][hapmap]
rs2353041	1.00[CEU][hapmap]
rs28537731	0.82[EUR][1000 genomes]
rs34702989	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35913079	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761800	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs3804339	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs4363071	1.00[CEU][hapmap];0.83[JPT][hapmap]
rs4946777	1.00[EUR][1000 genomes]
rs4946781	0.82[EUR][1000 genomes]
rs58169264	0.88[EUR][1000 genomes]
rs59742959	0.82[EUR][1000 genomes]
rs60838249	0.82[EUR][1000 genomes]
rs6914551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511912	0.82[EUR][1000 genomes]
rs7357000	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107132200-107135800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:107132200-107136000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:107132400-107136000	Weak transcription	Brain Anterior Caudate	brain
4	chr6:107132600-107135800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:107133200-107136000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:107134000-107136000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:107134000-107139800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:107134400-107135800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:107134400-107136000	Weak transcription	Osteobl	bone
10	chr6:107134400-107139600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:107134600-107134800	Enhancers	Stomach Mucosa	stomach

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