Variant report

Variant	rs2353041
Chromosome Location	chr6:107024633-107024634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10499046	1.00[CEU][hapmap]
rs12524955	1.00[CEU][hapmap]
rs12524961	1.00[CEU][hapmap]
rs12525436	1.00[CEU][hapmap]
rs12527773	1.00[CEU][hapmap]
rs12663120	1.00[CEU][hapmap]
rs1676009	0.85[AMR][1000 genomes]
rs1676011	0.87[YRI][hapmap];0.85[AMR][1000 genomes]
rs1676012	0.85[AMR][1000 genomes]
rs1676014	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1676015	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1676017	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17067226	1.00[CEU][hapmap]
rs17067245	1.00[CEU][hapmap]
rs17067371	1.00[CEU][hapmap]
rs17067393	1.00[CEU][hapmap]
rs17067432	1.00[CEU][hapmap]
rs17067445	1.00[CEU][hapmap]
rs17067469	1.00[CEU][hapmap]
rs17067613	1.00[CEU][hapmap]
rs17067614	1.00[CEU][hapmap]
rs1770727	0.87[YRI][hapmap];0.85[AMR][1000 genomes]
rs1770729	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1770730	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1979347	1.00[CEU][hapmap]
rs1981308	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2353035	1.00[CEU][hapmap]
rs3761800	1.00[CEU][hapmap]
rs3804339	1.00[CEU][hapmap]
rs4363071	1.00[CEU][hapmap]
rs4946766	0.84[AFR][1000 genomes]
rs4946769	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4946771	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs4946772	0.84[AFR][1000 genomes]
rs4946773	1.00[YRI][hapmap]
rs6568446	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6914497	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6938201	1.00[YRI][hapmap]
rs7749873	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9372137	0.86[AFR][1000 genomes]
rs9373878	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9373881	0.85[AFR][1000 genomes]
rs963683	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs968839	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106964800-107029800	Weak transcription	Small Intestine	intestine
2	chr6:106996400-107027000	Strong transcription	Primary B cells from peripheral blood	blood
3	chr6:106996400-107030800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:106996400-107074000	Weak transcription	Fetal Kidney	kidney
5	chr6:106999800-107030600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:107008400-107027600	Strong transcription	Primary T cells from cord blood	blood
7	chr6:107010200-107064600	Weak transcription	A549	lung
8	chr6:107011800-107030000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr6:107012800-107030600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:107014400-107038800	Weak transcription	Fetal Brain Female	brain
11	chr6:107016200-107039400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:107017000-107032800	Weak transcription	K562	blood
13	chr6:107017800-107041000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:107018000-107030800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:107018000-107052600	Weak transcription	Colonic Mucosa	Colon
16	chr6:107018400-107066400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:107018400-107076400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:107018600-107025600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:107018600-107029600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:107018600-107030000	Weak transcription	Fetal Intestine Large	intestine
21	chr6:107018600-107039000	Weak transcription	Placenta	Placenta
22	chr6:107018800-107030200	Weak transcription	Dnd41	blood
23	chr6:107018800-107039400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:107018800-107076200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr6:107019000-107029200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:107019000-107029400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:107019000-107029800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:107019000-107030200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:107019000-107030200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:107019000-107076200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:107019200-107029400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:107019200-107034800	Weak transcription	GM12878-XiMat	blood
33	chr6:107019400-107025800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:107019400-107034400	Weak transcription	NHEK	skin
35	chr6:107019400-107035200	Weak transcription	Fetal Lung	lung
36	chr6:107019600-107025800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr6:107019600-107029200	Weak transcription	Fetal Thymus	thymus
38	chr6:107019600-107029400	Weak transcription	Spleen	Spleen
39	chr6:107019800-107025400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:107019800-107029000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:107019800-107076400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:107020200-107037600	Weak transcription	Fetal Heart	heart
43	chr6:107020400-107027200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:107020600-107025600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:107020600-107029200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr6:107020600-107030600	Weak transcription	Thymus	Thymus
47	chr6:107020600-107032200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr6:107020800-107030000	Weak transcription	Esophagus	oesophagus
49	chr6:107021000-107029200	Weak transcription	Pancreas	Pancrea
50	chr6:107021600-107033400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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