Variant report

Variant	rs6568446
Chromosome Location	chr6:107050867-107050868
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10499045	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12110543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12111259	0.80[ASN][1000 genomes]
rs12660628	0.83[JPT][hapmap]
rs12663879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1676011	0.83[YRI][hapmap]
rs1676014	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs1676015	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs1676017	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs1770727	0.83[YRI][hapmap]
rs1770729	0.90[AFR][1000 genomes]
rs1770730	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs1824619	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2035152	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2035153	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs2035154	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2035155	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2353040	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2353041	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs3747791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3747792	0.87[ASN][1000 genomes]
rs3804343	0.83[JPT][hapmap]
rs4946769	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4946771	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4946772	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4946773	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59238907	0.81[ASN][1000 genomes]
rs6900830	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6900886	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6905061	0.87[ASN][1000 genomes]
rs6905519	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6906495	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6914497	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916265	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs6919395	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6923868	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6924412	0.80[AFR][1000 genomes]
rs6925367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6925512	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6933064	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6938201	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs72613231	1.00[ASN][1000 genomes]
rs72613232	1.00[ASN][1000 genomes]
rs72613233	1.00[ASN][1000 genomes]
rs72613234	1.00[ASN][1000 genomes]
rs72613235	1.00[ASN][1000 genomes]
rs72613236	1.00[ASN][1000 genomes]
rs72613237	0.87[ASN][1000 genomes]
rs72613238	0.87[ASN][1000 genomes]
rs7454323	1.00[ASN][1000 genomes]
rs7748400	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7749873	0.90[AFR][1000 genomes]
rs7759021	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9372137	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373878	0.90[AFR][1000 genomes]
rs9373881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs963683	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs968839	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106996400-107074000	Weak transcription	Fetal Kidney	kidney
2	chr6:107010200-107064600	Weak transcription	A549	lung
3	chr6:107018000-107052600	Weak transcription	Colonic Mucosa	Colon
4	chr6:107018400-107066400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:107018400-107076400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr6:107018800-107076200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:107019000-107076200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:107019800-107076400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:107022000-107076400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:107023400-107068800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:107023400-107076600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:107029600-107052600	Weak transcription	Pancreas	Pancrea
13	chr6:107030800-107076800	Weak transcription	Small Intestine	intestine
14	chr6:107031200-107052200	Weak transcription	Thymus	Thymus
15	chr6:107031200-107052600	Weak transcription	Gastric	stomach
16	chr6:107031200-107052800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:107031200-107058800	Weak transcription	Psoas Muscle	Psoas
18	chr6:107031200-107077000	Weak transcription	Spleen	Spleen
19	chr6:107031400-107065200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:107031400-107076200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:107031400-107076600	Weak transcription	Brain Angular Gyrus	brain
22	chr6:107031800-107076600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:107032600-107054000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:107033000-107076600	Weak transcription	Aorta	Aorta
25	chr6:107033200-107061000	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:107034400-107057400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:107035400-107076600	Weak transcription	Right Ventricle	heart
28	chr6:107035600-107054600	Weak transcription	Hela-S3	cervix
29	chr6:107035800-107070400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:107035800-107070400	Weak transcription	Fetal Lung	lung
31	chr6:107036000-107051800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr6:107037200-107053800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:107039200-107076400	Weak transcription	Brain Germinal Matrix	brain
34	chr6:107039200-107076600	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:107039600-107052600	Weak transcription	Fetal Intestine Small	intestine
36	chr6:107039600-107076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:107039600-107076600	Weak transcription	Fetal Stomach	stomach
38	chr6:107039800-107051800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:107039800-107052200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:107039800-107076200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:107039800-107076400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:107040000-107058800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:107040000-107059000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:107040000-107061400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:107040000-107062800	Weak transcription	NHLF	lung
46	chr6:107040000-107065200	Weak transcription	HepG2	liver
47	chr6:107040000-107066000	Weak transcription	Brain Anterior Caudate	brain
48	chr6:107040000-107068400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:107040000-107076600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:107040000-107076600	Weak transcription	Fetal Intestine Large	intestine

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