Variant report

Variant	rs3747792
Chromosome Location	chr6:107077550-107077551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:343)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:343 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:107077102-107077912	Hela-S3	cervix:	n/a	n/a
2	HEY1	chr6:107077066-107077717	HepG2	liver:	n/a	n/a
3	POLR2A	chr6:107076762-107078628	GM18505	blood:	n/a	n/a
4	TAF1	chr6:107077114-107077757	H1-hESC	embryonic stem cell:	n/a	n/a
5	TAF1	chr6:107077085-107077839	Hela-S3	cervix:	n/a	n/a
6	TAF1	chr6:107077215-107077640	PFSK-1	brain:	n/a	n/a
7	TBL1XR1	chr6:107077250-107077642	K562	blood:	n/a	n/a
8	ETS1	chr6:107077188-107077591	K562	blood:	n/a	n/a
9	POLR2A	chr6:107077158-107077688	A549	lung:	n/a	n/a
10	POLR2A	chr6:107077024-107077854	H1-neurons	neurons:	n/a	n/a
11	YY1	chr6:107076962-107077966	SK-N-SH	brain:	n/a	chr6:107077462-107077474 chr6:107077182-107077191 chr6:107077463-107077471
12	MYBL2	chr6:107076927-107077686	HepG2	liver:	n/a	chr6:107077619-107077633
13	ELF1	chr6:107077154-107077607	HepG2	liver:	n/a	n/a
14	POLR2A	chr6:107077114-107077717	HUVEC	blood vessel:	n/a	n/a
15	POLR2A	chr6:107076645-107078679	GM12878	blood:	n/a	n/a
16	POLR2A	chr6:107076913-107078043	SK-N-MC	brain:	n/a	n/a
17	SP1	chr6:107076751-107077708	GM12878	blood:	n/a	chr6:107077181-107077193 chr6:107077183-107077192 chr6:107077178-107077192 chr6:107077182-107077191 chr6:107077182-107077192 chr6:107077181-107077193 chr6:107077182-107077192 chr6:107077183-107077192
18	TAF1	chr6:107077228-107077631	SK-N-SH	brain:	n/a	n/a
19	POLR2A	chr6:107077155-107077684	HUVEC	blood vessel:	n/a	n/a
20	CHD2	chr6:107077227-107077840	H1-hESC	embryonic stem cell:	n/a	n/a
21	RCOR1	chr6:107077298-107077700	Hela-S3	cervix:	n/a	n/a
22	POLR2A	chr6:107077129-107077769	A549	lung:	n/a	n/a
23	POLR2A	chr6:107077034-107077788	MCF-7	breast:	n/a	n/a
24	PML	chr6:107076897-107077748	K562	blood:	n/a	n/a
25	SP1	chr6:107077222-107077555	K562	blood:	n/a	n/a
26	MYC	chr6:107076739-107077859	K562	blood:	n/a	n/a
27	POLR2A	chr6:107077059-107077727	HepG2	liver:	n/a	n/a
28	CEBPB	chr6:107077078-107077675	Hela-S3	cervix:	n/a	n/a
29	WRNIP1	chr6:107077298-107077907	GM12878	blood:	n/a	n/a
30	ELF1	chr6:107077131-107077763	HepG2	liver:	n/a	n/a
31	POLR2A	chr6:107077116-107077945	K562	blood:	n/a	n/a
32	SIN3AK20	chr6:107077144-107077971	K562	blood:	n/a	n/a
33	POLR2A	chr6:107076994-107077870	GM12878	blood:	n/a	n/a
34	POLR2A	chr6:107077110-107077909	IMR90	lung:	n/a	n/a
35	NFIC	chr6:107077291-107077614	HepG2	liver:	n/a	n/a
36	MYC	chr6:107076985-107078012	K562	blood:	n/a	n/a
37	MAX	chr6:107077087-107077859	SK-N-SH	brain:	n/a	n/a
38	TAF1	chr6:107077177-107077668	HepG2	liver:	n/a	n/a
39	ELK1	chr6:107077267-107077559	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr6:107077069-107077854	MCF-7	breast:	n/a	n/a
41	POLR2A	chr6:107076625-107078631	HepG2	liver:	n/a	n/a
42	HCFC1	chr6:107077123-107078060	K562	blood:	n/a	n/a
43	MAX	chr6:107077228-107077925	A549	lung:	n/a	n/a
44	POLR2A	chr6:107077133-107077910	HUVEC	blood vessel:	n/a	n/a
45	MYC	chr6:107077170-107077760	MCF10A-Er-Src	breast:	n/a	n/a
46	CREB1	chr6:107076907-107077910	GM12878	blood:	n/a	n/a
47	POLR2A	chr6:107077000-107077955	GM12891	blood:	n/a	n/a
48	IRF3	chr6:107077259-107077608	Hela-S3	cervix:	n/a	chr6:107077379-107077388
49	POLR2A	chr6:107076768-107077953	K562	blood:	n/a	n/a
50	POLR2A	chr6:107077011-107078004	HL-60	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:107077549-107077599	NB4	blood:	n/a
2	chr6:107077549-107077599	GM06990	blood:	n/a
3	chr6:107077549-107077599	LNCaP	prostate:	n/a
4	chr6:107077549-107077599	PFSK-1	brain:	n/a
5	chr6:107077549-107077599	HUVEC	blood vessel:	n/a
6	chr6:107077549-107077599	AG04449	skin:	fetal
7	chr6:107077549-107077599	HIPEpiC	eye:	n/a
8	chr6:107077549-107077599	PANC-1	pancreas:	n/a
9	chr6:107077549-107077599	K562	blood:	n/a
10	chr6:107077549-107077599	IMR90	lung:	fetal
11	chr6:107077549-107077599	GM19239	blood:	n/a
12	chr6:107077549-107077599	HRCEpiC	kidney:	n/a
13	chr6:107077549-107077599	GM12891	blood:	n/a
14	chr6:107077549-107077599	SAEC	small airway:	n/a
15	chr6:107077549-107077599	NHDF-neo	bronchial:	n/a
16	chr6:107077549-107077599	U87	brain:	n/a
17	chr6:107077549-107077599	HCPEpiC	choroid plexus:	n/a
18	chr6:107077549-107077599	SK-N-SH	brain:	n/a
19	chr6:107077549-107077599	AG09319	gingival:	n/a
20	chr6:107077549-107077599	ECC-1	luminal epithelium:	n/a
21	chr6:107077549-107077599	HEEpiC	esophagus:	n/a
22	chr6:107077549-107077599	AoSMC	blood vessel:	n/a
23	chr6:107077549-107077599	AG04450	lung:	fetal
24	chr6:107077549-107077599	HCM	heart:	n/a
25	chr6:107077549-107077599	SKMC	muscle:	n/a
26	chr6:107077549-107077599	HMEC	breast:	n/a
27	chr6:107077549-107077599	AG09309	skin:	n/a
28	chr6:107077549-107077599	AG10803	skin:	n/a
29	chr6:107077549-107077599	HRPEpiC	eye:	n/a
30	chr6:107077549-107077599	Jurkat	blood:	n/a
31	chr6:107077549-107077599	HL-60	blood:	n/a
32	chr6:107077549-107077599	SK-N-SH_RA	brain:	n/a
33	chr6:107077549-107077599	Caco-2	colon:	n/a
34	chr6:107077549-107077599	Hela-S3	cervix:	n/a
35	chr6:107077549-107077599	H1-hESC	embryonic stem cell:	embryo
36	chr6:107077549-107077599	PrEC	prostate:	n/a
37	chr6:107077549-107077599	ProgFib	skin:	n/a
38	chr6:107077549-107077599	MCF-7	breast:	n/a
39	chr6:107077549-107077599	ovcar-3	ovarian:	n/a
40	chr6:107077549-107077599	GM12878	blood:	n/a
41	chr6:107077549-107077599	NH-A	brain:	n/a
42	chr6:107077549-107077599	HPAEpiC	pulmonary alveolar:	n/a
43	chr6:107077549-107077599	T-47D	breast:	n/a
44	chr6:107077549-107077599	HCF	heart:	n/a
45	chr6:107077549-107077599	BJ	skin:	n/a
46	chr6:107077549-107077599	GM12892	blood:	n/a
47	chr6:107077549-107077599	MCF10A-Er-Src	breast:	n/a
48	chr6:107077549-107077599	SK-N-MC	brain:	n/a
49	chr6:107077549-107077599	RPTEC	kidney:	n/a
50	chr6:107077549-107077599	CMK	blood:	n/a

No data

Variant related genes	Relation type
RTN4IP1	TF binding region
RTN4IP1	CpG island

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10499045	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12110543	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111259	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12663879	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1824619	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2035152	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2035153	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2035154	0.87[ASN][1000 genomes]
rs2035155	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2353040	0.87[ASN][1000 genomes]
rs3747791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946769	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946771	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946772	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946773	0.87[ASN][1000 genomes]
rs59238907	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6568446	0.87[ASN][1000 genomes]
rs6900830	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6900886	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6905061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905519	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6906495	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6914497	0.87[ASN][1000 genomes]
rs6916265	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6919395	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6923868	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6925367	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6925512	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6933064	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613231	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613232	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613233	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613234	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613235	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613236	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613237	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613238	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613241	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7454323	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7748400	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759021	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9372137	0.87[ASN][1000 genomes]
rs9373881	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107075800-107077800	Active TSS	Rectal Mucosa Donor 31	rectum
2	chr6:107076200-107078000	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr6:107076200-107078000	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:107076200-107078000	Active TSS	Rectal Smooth Muscle	rectum
5	chr6:107076200-107078400	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr6:107076200-107079400	Active TSS	K562	blood
7	chr6:107076200-107080600	Active TSS	GM12878-XiMat	blood
8	chr6:107076400-107078000	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr6:107076400-107078000	Active TSS	Brain Substantia Nigra	brain
10	chr6:107076400-107078000	Active TSS	Colon Smooth Muscle	Colon
11	chr6:107076400-107078000	Active TSS	Fetal Brain Female	brain
12	chr6:107076400-107078200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:107076400-107078200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:107076400-107078200	Active TSS	Stomach Smooth Muscle	stomach
15	chr6:107076400-107078400	Active TSS	H1 Cell Line	embryonic stem cell
16	chr6:107076400-107078400	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr6:107076400-107078400	Active TSS	Psoas Muscle	Psoas
18	chr6:107076400-107078400	Active TSS	Right Atrium	heart
19	chr6:107076400-107078400	Active TSS	HMEC	breast
20	chr6:107076400-107078400	Active TSS	HSMMtube	muscle
21	chr6:107076400-107078600	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr6:107076400-107078600	Active TSS	A549	lung
23	chr6:107076400-107078800	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr6:107076400-107078800	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr6:107076600-107077600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:107076600-107078000	Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr6:107076600-107078000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:107076600-107078000	Active TSS	Aorta	Aorta
29	chr6:107076600-107078200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:107076600-107078200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:107076600-107078200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:107076600-107078200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:107076600-107078200	Active TSS	Fetal Stomach	stomach
34	chr6:107076600-107078200	Active TSS	Left Ventricle	heart
35	chr6:107076600-107078200	Active TSS	HSMM	muscle
36	chr6:107076600-107078200	Active TSS	NH-A	brain
37	chr6:107076600-107078200	Active TSS	NHLF	lung
38	chr6:107076600-107078400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr6:107076600-107078400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:107076600-107078400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:107076600-107078400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:107076600-107078400	Active TSS	Brain Germinal Matrix	brain
43	chr6:107076600-107078400	Active TSS	Colonic Mucosa	Colon
44	chr6:107076600-107078400	Active TSS	Fetal Intestine Large	intestine
45	chr6:107076600-107078400	Active TSS	Fetal Intestine Small	intestine
46	chr6:107076600-107078400	Active TSS	Ovary	ovary
47	chr6:107076600-107078400	Active TSS	Right Ventricle	heart
48	chr6:107076600-107078400	Active TSS	Stomach Mucosa	stomach
49	chr6:107076600-107078600	Active TSS	H9 Cell Line	embryonic stem cell
50	chr6:107076600-107078600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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