Variant report

Variant	rs2035153
Chromosome Location	chr6:107065100-107065101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:107061851..107064712-chr6:107064775..107067143,3	MCF-7	breast:
2	chr6:107064558..107066890-chr6:107073407..107075549,2	MCF-7	breast:
3	chr6:107064688..107066925-chr6:107075577..107077497,2	MCF-7	breast:
4	chr6:107029272..107031776-chr6:107065093..107067510,2	K562	blood:

Variant related genes	Relation type
ENSG00000130348	Chromatin interaction
ENSG00000130347	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10499045	0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs12110543	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12111259	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12663879	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1824619	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035152	0.91[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035154	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2035155	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2353040	1.00[ASN][1000 genomes]
rs3747791	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3747792	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946769	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946771	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946772	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946773	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs59238907	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6568446	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs6900830	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900886	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905061	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6905519	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906495	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914497	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6916265	1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919395	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923868	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925367	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933064	0.91[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613232	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613233	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613234	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613235	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613236	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613237	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613238	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613241	1.00[EUR][1000 genomes]
rs7454323	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748400	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7759021	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372137	1.00[ASN][1000 genomes]
rs9373881	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106996400-107074000	Weak transcription	Fetal Kidney	kidney
2	chr6:107018400-107066400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:107018400-107076400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:107018800-107076200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:107019000-107076200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:107019800-107076400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:107022000-107076400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:107023400-107068800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:107023400-107076600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:107030800-107076800	Weak transcription	Small Intestine	intestine
11	chr6:107031200-107077000	Weak transcription	Spleen	Spleen
12	chr6:107031400-107065200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:107031400-107076200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:107031400-107076600	Weak transcription	Brain Angular Gyrus	brain
15	chr6:107031800-107076600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:107033000-107076600	Weak transcription	Aorta	Aorta
17	chr6:107035400-107076600	Weak transcription	Right Ventricle	heart
18	chr6:107035800-107070400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:107035800-107070400	Weak transcription	Fetal Lung	lung
20	chr6:107039200-107076400	Weak transcription	Brain Germinal Matrix	brain
21	chr6:107039200-107076600	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:107039600-107076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:107039600-107076600	Weak transcription	Fetal Stomach	stomach
24	chr6:107039800-107076200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:107039800-107076400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:107040000-107065200	Weak transcription	HepG2	liver
27	chr6:107040000-107066000	Weak transcription	Brain Anterior Caudate	brain
28	chr6:107040000-107068400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:107040000-107076600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr6:107040000-107076600	Weak transcription	Fetal Intestine Large	intestine
31	chr6:107040200-107068400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:107040200-107070600	Weak transcription	Dnd41	blood
33	chr6:107040200-107076200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr6:107040200-107076400	Weak transcription	Brain Substantia Nigra	brain
35	chr6:107040200-107076600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:107040200-107076600	Weak transcription	Ovary	ovary
37	chr6:107040400-107066400	Weak transcription	Liver	Liver
38	chr6:107040400-107066600	Weak transcription	HSMM	muscle
39	chr6:107040400-107070200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:107045600-107076600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:107048200-107070200	Weak transcription	Lung	lung
42	chr6:107048600-107065200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:107048600-107066400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr6:107048600-107073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:107048600-107076600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:107050600-107076200	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr6:107051600-107076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:107053000-107070400	Weak transcription	Thymus	Thymus
49	chr6:107053000-107076400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:107053000-107076800	Weak transcription	Esophagus	oesophagus

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