Variant report

Variant	rs7759021
Chromosome Location	chr6:107074821-107074822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:107073355..107074976-chr6:107077031..107079689,2	K562	blood:
2	chr6:107069196..107071474-chr6:107071746..107076054,3	MCF-7	breast:
3	chr6:107064558..107066890-chr6:107073407..107075549,2	MCF-7	breast:
4	chr6:107074480..107076734-chr6:107196823..107198959,2	MCF-7	breast:
5	chr6:107074696..107076514-chr6:107078215..107079891,2	K562	blood:

Variant related genes	Relation type
ENSG00000130348	Chromatin interaction
ENSG00000130347	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10499045	0.93[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11758592	1.00[CEU][hapmap]
rs12110543	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12111259	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12660628	0.83[JPT][hapmap]
rs12663879	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1824619	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035152	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035153	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2035154	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2035155	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2353040	1.00[ASN][1000 genomes]
rs3747791	0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3747792	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3804343	0.83[JPT][hapmap]
rs4946769	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946771	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946772	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946773	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs59238907	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6568446	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6900830	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900886	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905061	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6905519	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906495	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914497	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs6916265	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919395	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923868	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925512	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933064	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613232	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613233	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613234	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613235	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613236	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72613237	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613238	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72613241	1.00[EUR][1000 genomes]
rs7454323	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748400	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9372137	1.00[ASN][1000 genomes]
rs9373881	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107018400-107076400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:107018800-107076200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:107019000-107076200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:107019800-107076400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:107022000-107076400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:107023400-107076600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:107030800-107076800	Weak transcription	Small Intestine	intestine
8	chr6:107031200-107077000	Weak transcription	Spleen	Spleen
9	chr6:107031400-107076200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:107031400-107076600	Weak transcription	Brain Angular Gyrus	brain
11	chr6:107031800-107076600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:107033000-107076600	Weak transcription	Aorta	Aorta
13	chr6:107035400-107076600	Weak transcription	Right Ventricle	heart
14	chr6:107039200-107076400	Weak transcription	Brain Germinal Matrix	brain
15	chr6:107039200-107076600	Weak transcription	Fetal Muscle Leg	muscle
16	chr6:107039600-107076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:107039600-107076600	Weak transcription	Fetal Stomach	stomach
18	chr6:107039800-107076200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:107039800-107076400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:107040000-107076600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:107040000-107076600	Weak transcription	Fetal Intestine Large	intestine
22	chr6:107040200-107076200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr6:107040200-107076400	Weak transcription	Brain Substantia Nigra	brain
24	chr6:107040200-107076600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:107040200-107076600	Weak transcription	Ovary	ovary
26	chr6:107045600-107076600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:107048600-107076600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:107050600-107076200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr6:107051600-107076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:107053000-107076400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:107053000-107076800	Weak transcription	Esophagus	oesophagus
32	chr6:107053000-107076800	Weak transcription	Gastric	stomach
33	chr6:107053200-107076400	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:107054200-107076000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:107055400-107076000	Weak transcription	Hela-S3	cervix
36	chr6:107056400-107075800	Weak transcription	Placenta	Placenta
37	chr6:107057800-107076400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:107059200-107075800	Weak transcription	Psoas Muscle	Psoas
39	chr6:107059600-107076400	Weak transcription	Fetal Heart	heart
40	chr6:107060000-107076400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:107062200-107076000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:107063600-107076400	Weak transcription	HSMMtube	muscle
43	chr6:107064000-107076400	Weak transcription	Fetal Brain Female	brain
44	chr6:107064400-107076200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:107064600-107075800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr6:107065400-107076400	Weak transcription	A549	lung
47	chr6:107065600-107075800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:107065600-107076200	Weak transcription	Stomach Mucosa	stomach
49	chr6:107066600-107076600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr6:107066800-107076600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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