Variant report

Variant	rs72613241
Chromosome Location	chr6:107111084-107111085
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10499045	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12110543	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12111259	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12663879	1.00[EUR][1000 genomes]
rs1824619	1.00[EUR][1000 genomes]
rs2035152	1.00[EUR][1000 genomes]
rs2035153	1.00[EUR][1000 genomes]
rs2035155	1.00[EUR][1000 genomes]
rs3747791	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3747792	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4946769	1.00[EUR][1000 genomes]
rs4946771	1.00[EUR][1000 genomes]
rs4946772	1.00[EUR][1000 genomes]
rs59238907	1.00[EUR][1000 genomes]
rs6900830	1.00[EUR][1000 genomes]
rs6900886	1.00[EUR][1000 genomes]
rs6905061	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6905519	1.00[EUR][1000 genomes]
rs6906495	1.00[EUR][1000 genomes]
rs6916265	1.00[EUR][1000 genomes]
rs6919395	1.00[EUR][1000 genomes]
rs6923868	1.00[EUR][1000 genomes]
rs6925367	1.00[EUR][1000 genomes]
rs6925512	1.00[EUR][1000 genomes]
rs6933064	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72613231	1.00[EUR][1000 genomes]
rs72613232	1.00[EUR][1000 genomes]
rs72613233	1.00[EUR][1000 genomes]
rs72613234	1.00[EUR][1000 genomes]
rs72613235	1.00[EUR][1000 genomes]
rs72613236	1.00[EUR][1000 genomes]
rs72613237	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72613238	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7454323	1.00[EUR][1000 genomes]
rs7748400	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7759021	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv516902	chr6:107104374-107115394	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
3	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:107091400-107111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:107092800-107116400	Weak transcription	Brain Substantia Nigra	brain
8	chr6:107100200-107111800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:107101600-107111200	Weak transcription	Right Ventricle	heart
10	chr6:107104200-107113000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:107104800-107115000	Weak transcription	Colonic Mucosa	Colon
12	chr6:107104800-107116200	Weak transcription	Brain Angular Gyrus	brain
13	chr6:107104800-107116400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:107105000-107118000	Weak transcription	Esophagus	oesophagus
15	chr6:107105000-107118000	Weak transcription	Gastric	stomach
16	chr6:107105600-107113800	Strong transcription	Hela-S3	cervix
17	chr6:107106600-107126200	Weak transcription	Psoas Muscle	Psoas
18	chr6:107106800-107111400	Weak transcription	K562	blood
19	chr6:107106800-107113000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:107107000-107111800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:107107000-107112000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:107107000-107112200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:107107000-107118000	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:107107200-107114600	Weak transcription	HMEC	breast
25	chr6:107107200-107115000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:107107400-107111600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:107107400-107115400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:107107400-107115600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:107107600-107111600	Strong transcription	Fetal Muscle Trunk	muscle
30	chr6:107107800-107116400	Weak transcription	NHDF-Ad	bronchial
31	chr6:107108000-107111200	Weak transcription	Fetal Kidney	kidney
32	chr6:107108000-107111600	Strong transcription	Fetal Stomach	stomach
33	chr6:107108000-107112400	Weak transcription	HSMM	muscle
34	chr6:107108000-107112800	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:107108000-107114200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:107108000-107117400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr6:107108200-107111200	Strong transcription	GM12878-XiMat	blood
38	chr6:107108200-107113200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:107108200-107116400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:107108400-107113800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:107108400-107113800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:107108400-107116200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr6:107108400-107118000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:107108600-107111600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:107108800-107111200	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr6:107108800-107112200	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr6:107108800-107113600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:107108800-107115200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:107108800-107115200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:107108800-107115200	Weak transcription	Pancreas	Pancrea

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