Variant report

Variant	rs58169264
Chromosome Location	chr6:107138824-107138825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10485221	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11965826	0.84[EUR][1000 genomes]
rs12661223	0.88[EUR][1000 genomes]
rs12665651	0.88[EUR][1000 genomes]
rs34702989	0.88[EUR][1000 genomes]
rs35913079	0.88[EUR][1000 genomes]
rs4946777	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6914551	0.88[EUR][1000 genomes]
rs6934849	0.88[EUR][1000 genomes]
rs7357000	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107134000-107139800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:107134400-107139600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:107136000-107148200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:107136200-107139000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:107136200-107139000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:107136200-107139400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:107136200-107140800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:107136400-107139000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:107136400-107139200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:107136400-107140600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:107136400-107140800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:107136600-107139000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:107136600-107140000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:107136800-107139200	Weak transcription	Hela-S3	cervix
15	chr6:107136800-107139600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:107136800-107139800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:107136800-107139800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:107136800-107139800	Weak transcription	HMEC	breast
19	chr6:107136800-107140000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:107136800-107140000	Weak transcription	Osteobl	bone
21	chr6:107137000-107139000	Weak transcription	Liver	Liver
22	chr6:107137000-107139000	Weak transcription	Stomach Mucosa	stomach
23	chr6:107137000-107141800	Weak transcription	Primary B cells from cord blood	blood
24	chr6:107137000-107141800	Weak transcription	Fetal Intestine Small	intestine
25	chr6:107137400-107139200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:107137600-107141800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr6:107138000-107139200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:107138000-107139200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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