Variant report

Variant	rs34702989
Chromosome Location	chr6:107135061-107135062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10485221	1.00[EUR][1000 genomes]
rs11965826	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11970567	0.80[EUR][1000 genomes]
rs12111123	0.82[EUR][1000 genomes]
rs12661223	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12665651	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17052232	0.82[EUR][1000 genomes]
rs17567332	0.87[EUR][1000 genomes]
rs28537731	0.82[EUR][1000 genomes]
rs35913079	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946777	1.00[EUR][1000 genomes]
rs4946781	0.82[EUR][1000 genomes]
rs58169264	0.88[EUR][1000 genomes]
rs59742959	0.82[EUR][1000 genomes]
rs60838249	0.82[EUR][1000 genomes]
rs6914551	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934849	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73511912	0.82[EUR][1000 genomes]
rs7357000	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107132200-107135800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:107132200-107136000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:107132400-107136000	Weak transcription	Brain Anterior Caudate	brain
4	chr6:107132600-107135800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:107133200-107136000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:107134000-107136000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:107134000-107139800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:107134400-107135800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:107134400-107136000	Weak transcription	Osteobl	bone
10	chr6:107134400-107139600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:107134800-107136200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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