Variant report

Variant	rs60838249
Chromosome Location	chr6:107162946-107162947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10485221	0.82[EUR][1000 genomes]
rs11965826	0.86[EUR][1000 genomes]
rs12111123	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12661223	0.82[EUR][1000 genomes]
rs12665651	0.82[EUR][1000 genomes]
rs17052232	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17567332	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1977148	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2354224	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28537731	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34702989	0.82[EUR][1000 genomes]
rs35913079	0.82[EUR][1000 genomes]
rs4946777	0.82[EUR][1000 genomes]
rs4946781	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59742959	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914551	0.82[EUR][1000 genomes]
rs6934849	0.82[EUR][1000 genomes]
rs73511912	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7357000	0.86[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107158800-107163600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:107158800-107169200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:107160400-107163600	Enhancers	Primary B cells from cord blood	blood
4	chr6:107160800-107163600	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:107161400-107163200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:107161600-107163800	Weak transcription	Stomach Mucosa	stomach
7	chr6:107161800-107163600	Weak transcription	GM12878-XiMat	blood
8	chr6:107161800-107164600	Weak transcription	Fetal Intestine Large	intestine
9	chr6:107162000-107163200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:107162000-107163600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:107162200-107163800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:107162200-107164000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:107162200-107164000	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:107162200-107169400	Weak transcription	Small Intestine	intestine
15	chr6:107162400-107163400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:107162400-107164800	Weak transcription	HepG2	liver
17	chr6:107162600-107163800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr6:107162600-107169200	Weak transcription	Pancreas	Pancrea
19	chr6:107162800-107163800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:107162800-107163800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:107162800-107164800	Weak transcription	Liver	Liver

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