Variant report

Variant	rs2354224
Chromosome Location	chr6:107164670-107164671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-QRSL1-2	chr6:107164110-107167451	XLOC_005414
2	lnc-QRSL1-2	chr6:107164110-107166228	NONHSAT114254

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10485221	0.81[AMR][1000 genomes]
rs12111123	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17052232	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17567332	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1977148	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28537731	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4946777	0.81[AMR][1000 genomes]
rs4946781	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59742959	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60838249	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73511912	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107158800-107169200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:107162200-107169400	Weak transcription	Small Intestine	intestine
3	chr6:107162400-107164800	Weak transcription	HepG2	liver
4	chr6:107162600-107169200	Weak transcription	Pancreas	Pancrea
5	chr6:107162800-107164800	Weak transcription	Liver	Liver
6	chr6:107163200-107164800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:107163600-107165000	Enhancers	HMEC	breast
8	chr6:107163600-107165600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:107163800-107165400	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:107163800-107165800	Enhancers	Stomach Mucosa	stomach
11	chr6:107164000-107165400	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr6:107164000-107165600	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:107164000-107165600	Enhancers	Fetal Intestine Small	intestine
14	chr6:107164200-107165000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:107164200-107169200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:107164400-107164800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:107164400-107164800	Enhancers	Colonic Mucosa	Colon
18	chr6:107164400-107165000	Enhancers	NHEK	skin
19	chr6:107164400-107165200	Enhancers	Primary B cells from cord blood	blood
20	chr6:107164600-107165400	Enhancers	Fetal Intestine Large	intestine
21	chr6:107164600-107165400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:107164600-107169000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:107164600-107169200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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