The 2.0 version of rSNPBase

Variant report

Variant rs235472
Chromosome Location chr1:171520279-171520280
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:171475800-171524400 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:171481000-171528000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr1:171481200-171522400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
4 chr1:171481400-171522800 Strong transcription iPS-20b Cell Line embryonic stem cell
5 chr1:171481600-171520600 Strong transcription Primary T cells fromperipheralblood blood
6 chr1:171481800-171520600 Strong transcription Placenta Placenta
7 chr1:171482000-171520400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
8 chr1:171482000-171520400 Strong transcription Rectal Mucosa Donor 31 rectum
9 chr1:171482000-171522000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
10 chr1:171482000-171523000 Strong transcription Primary T helper cells fromperipheralblood blood
11 chr1:171482000-171524400 Strong transcription HUES6 Cell Line embryonic stem cell
12 chr1:171482200-171520400 Strong transcription Duodenum Mucosa Duodenum
13 chr1:171482200-171520600 Strong transcription Primary T helper cells PMA-I stimulated --
14 chr1:171482200-171520600 Strong transcription Fetal Thymus thymus
15 chr1:171482200-171541800 Strong transcription Primary B cells from peripheral blood blood
16 chr1:171482400-171520400 Strong transcription Primary T regulatory cells fromperipheralblood blood
17 chr1:171482600-171520600 Strong transcription Primary T helper 17 cells PMA-I stimulated --
18 chr1:171483200-171520400 Strong transcription Primary T helper naive cells from peripheral blood blood
19 chr1:171483200-171520600 Strong transcription H1 Cell Line embryonic stem cell
20 chr1:171483600-171520400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
21 chr1:171495200-171524800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr1:171497200-171520600 Strong transcription Duodenum Smooth Muscle Duodenum
23 chr1:171501200-171525600 Weak transcription Fetal Heart heart
24 chr1:171502600-171520400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
25 chr1:171504400-171520600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr1:171504600-171520400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr1:171505200-171525600 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr1:171507000-171520400 Strong transcription Primary neutrophils fromperipheralblood blood
29 chr1:171508400-171520600 Strong transcription Fetal Lung lung
30 chr1:171508400-171521200 Strong transcription Primary hematopoietic stem cells blood
31 chr1:171511200-171525000 Weak transcription Stomach Mucosa stomach
32 chr1:171511600-171524800 Weak transcription Spleen Spleen
33 chr1:171511800-171524200 Weak transcription Brain Substantia Nigra brain
34 chr1:171511800-171525000 Weak transcription Colonic Mucosa Colon
35 chr1:171513000-171525200 Weak transcription HSMMtube muscle
36 chr1:171513400-171525000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr1:171513400-171525000 Weak transcription Right Ventricle heart
38 chr1:171513600-171525800 Weak transcription NHLF lung
39 chr1:171515400-171520400 Strong transcription Thymus Thymus
40 chr1:171515400-171520600 Strong transcription Fetal Muscle Trunk muscle
41 chr1:171515400-171520600 Strong transcription Fetal Muscle Leg muscle
42 chr1:171515600-171524800 Weak transcription Primary T killer memory cells from peripheral blood blood
43 chr1:171516200-171526600 Weak transcription Small Intestine intestine
44 chr1:171516400-171520400 Strong transcription Skeletal Muscle Male skeletal muscle
45 chr1:171516800-171520400 Strong transcription Left Ventricle heart
46 chr1:171517000-171520400 Strong transcription Brain Anterior Caudate brain
47 chr1:171517400-171524400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr1:171517400-171525000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr1:171517400-171525000 Weak transcription Esophagus oesophagus
50 chr1:171517600-171524800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015